Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,100,904 – 9,101,000 |
Length | 96 |
Max. P | 0.872950 |
Location | 9,100,904 – 9,101,000 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 91.68 |
Mean single sequence MFE | -24.26 |
Consensus MFE | -18.54 |
Energy contribution | -18.58 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -2.11 |
Structure conservation index | 0.76 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872950 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9100904 96 + 27905053 GAGCAAAUUAAAUAAGGGCCAAUUUGUGACUUUGAUUGGGUCGCGAAUAUAAGUUG--GUAACCAGUGCUCUCUGGAAACACAUGCAUAUUUAUGCAA (((((..........(((((((((((((((((.....)))))))))......))))--))..))..)))))..((....))..(((((....))))). ( -25.90) >DroSec_CAF1 10641 98 + 1 GAUGAAAUUAAAUAAGGGCCAAUUUGUGACUUCGAUUAGGUCGCGAAUAUAUGUUGGGGUAACCAGUGCUCAAUGGAAUCACAUGCAUAUUUAUGCAA ...............(((((.(((((((((((.....)))))))))))......(((.....)))).))))............(((((....))))). ( -23.40) >DroSim_CAF1 11797 98 + 1 GAUGAAAUGAAAUAAGGGCCAAUUUGUGACUUUGAUUAGGUCGCGAAUAUAUGUUGGGGUAACCAGUGCUCACUGGAAACACAUGCAUAUUUAUGCAA ...............(((((.(((((((((((.....)))))))))))......(((.....)))).))))..((....))..(((((....))))). ( -26.20) >DroEre_CAF1 11530 96 + 1 GAUGAAAUAAAAUAAGGGCCAAUUGGUGACUUCUAAUAGGUCGCGAAUAUAAGUUG--GUAACCAGUGCUCACUGGAAACACAUGCAUAUUUAUGCAA .................(((((((.(((((((.....))))))).......)))))--))..(((((....))))).......(((((....))))). ( -23.20) >DroYak_CAF1 10888 96 + 1 GAUGAAAUUAAAUAAGGGCCAAUUUGUGACUUCUAUUAGGUCGCGAAUAUAAGUUG--GUAACCAAUGCUCACUGAAAAAACAUGCAUAUUUAUGCAA ...............((((..(((((((((((.....)))))))))))....((((--(...)))))))))............(((((....))))). ( -22.60) >consensus GAUGAAAUUAAAUAAGGGCCAAUUUGUGACUUCGAUUAGGUCGCGAAUAUAAGUUG__GUAACCAGUGCUCACUGGAAACACAUGCAUAUUUAUGCAA ...............((((..(((((((((((.....)))))))))))....((((...))))....))))............(((((....))))). (-18.54 = -18.58 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:24 2006