Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,099,184 – 9,099,286 |
Length | 102 |
Max. P | 0.781705 |
Location | 9,099,184 – 9,099,286 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.75 |
Mean single sequence MFE | -25.47 |
Consensus MFE | -21.75 |
Energy contribution | -21.92 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.87 |
Structure conservation index | 0.85 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9099184 102 + 27905053 --------AUAAGCAUAGGCAGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------CACC --------....((((((((...-.)).).)))))(((((((((((((.((((...........)))).))))))))))...(((...(((.......)))))).))---------)... ( -25.80) >DroSec_CAF1 8887 105 + 1 GCC-----AUAUACAUAGUCAGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------CACC (((-----((...(((.....(.-((((....)))).)((((((((((.((((...........)))).))))))))))..)))...)))))...............---------.... ( -25.00) >DroSim_CAF1 10049 105 + 1 GCC-----AUAUACAUAGUCAGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------CACC (((-----((...(((.....(.-((((....)))).)((((((((((.((((...........)))).))))))))))..)))...)))))...............---------.... ( -25.00) >DroEre_CAF1 9830 97 + 1 ACC-----AAGU--------AGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------GACC ...-----....--------.((-(((.(((.(((((.((((((((((.((((...........)))).))))))))))..))))).))))).......(.....).---------))). ( -22.90) >DroYak_CAF1 9160 97 + 1 ACC-----AUGU--------AGU-CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA---------CACC ...-----....--------.((-(...(((.(((((.((((((((((.((((...........)))).))))))))))..))))).)))((.........))..))---------)... ( -23.60) >DroAna_CAF1 12380 118 + 1 UACAUUACAUAUGUAUGUGUGGUACGCA-GUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAA-AACCAGCAAGCGGCAACUCGCAGC (((((.....)))))((((.(...(((.-...(((((.((((((((((.((((...........)))).))))))))))..)))))..(((....-..)))....)))....).)))).. ( -30.50) >consensus ACC_____AUAU_CAUAG_CAGU_CGCACGUAUGCGUCACAUUGGCUUCGAUUUAUAAUUUCUCGGUCAAAGUCAAUGUCAAUGCAAAUGGCAAAAAACCAGCAAGA_________CACC .........................((.(((.(((((.((((((((((.((((...........)))).))))))))))..))))).)))))............................ (-21.75 = -21.92 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:21 2006