Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,098,544 – 9,098,635 |
Length | 91 |
Max. P | 0.812412 |
Location | 9,098,544 – 9,098,635 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 88.87 |
Mean single sequence MFE | -23.08 |
Consensus MFE | -19.96 |
Energy contribution | -20.48 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.11 |
Mean z-score | -1.54 |
Structure conservation index | 0.86 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.812412 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9098544 91 - 27905053 AAAAA----------AACCGAUCCGAUCCGAAAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGCUUCGCUGCCGACUAUUUGGCAUUA .....----------....(((((((((.(((((....(((.........))).....)))))..)))))))))........((((((....))))))... ( -20.30) >DroSec_CAF1 8240 101 - 1 AAAAAAAAAAAACCGAACCGAUCCGAUCCGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGCUUCGCUGCCGACUAUUUGGCAUUA .............(((((.(((((((((.(((((....(((.........))).....)))))..))))))))).).)))).((((((....))))))... ( -23.70) >DroSim_CAF1 9392 101 - 1 AAAAAAAAAAAACCGAACCGAUCCGAUCCGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGCUUCGCUGCCGACUAUUUGGCAUUA .............(((((.(((((((((.(((((....(((.........))).....)))))..))))))))).).)))).((((((....))))))... ( -23.70) >DroEre_CAF1 9211 99 - 1 AAAAU-CCGA-ACCGAUUCGAACCGACCGGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGCUCUGCUUCGCUGCCGACUAUUUGGCAUUA .....-....-..(((..(((.((((((((((((....(((.........))).....)))))).)))))).)).)..))).((((((....))))))... ( -24.70) >DroYak_CAF1 8519 97 - 1 ---AU-CCGAAACCGAACCGAACCGAUCCGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGUUUCGCUGCCGACUAUUUGGCAUUA ---..-.((((((.((.((.(((((((..(((((..(.((.....)).)..)))))..)))....)))))).)).)))))).((((((....))))))... ( -23.00) >consensus AAAAA_AAAAAACCGAACCGAUCCGAUCCGAGAUCUUCGCAUUUCGUUAUUGUCUUCUAUUUCCUGGUUGGAUCCGCUUCGCUGCCGACUAUUUGGCAUUA .............(((((.(((((((((.(((((....(((.........))).....)))))..))))))))).).)))).((((((....))))))... (-19.96 = -20.48 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:20 2006