Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,092,642 – 9,092,745 |
Length | 103 |
Max. P | 0.500000 |
Location | 9,092,642 – 9,092,745 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 80.13 |
Mean single sequence MFE | -34.40 |
Consensus MFE | -17.37 |
Energy contribution | -17.23 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.43 |
Mean z-score | -2.06 |
Structure conservation index | 0.50 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9092642 103 + 27905053 GAAGCGGCAAAGGCGCGGCAUGAGUUGAGUGCCCGGCAUGUAAAGCUGGUAAAGCAGUUCAAAAUGCGGCAAGCGAAACUGCACCAGGGCACAA-ACA-CGCAAA ...((.((......)).))....(((..((((((.(((.((...(((.((...(((........))).)).)))...)))))....)))))).)-)).-...... ( -33.70) >DroSec_CAF1 2327 103 + 1 GAAACGGCAAAGGCGCGACAUGAGUUGAGUGUCCGGCAUGUAAAGCUGGUGAAGCAGUUCAAGAAGCGGCAAGCCAAACUGCACCAUGGCACAA-ACA-CGCAAA ......((...(.(((..(.(((..((.....(((((.......))))).....))..))).)..))).)..((((..........))))....-...-.))... ( -27.70) >DroSim_CAF1 3483 103 + 1 GAAUCGGCAAAGGCGCGGCAUGAGUUGAGUGUCCGGCAUGUAAAGCUGGUGAAGCAGUUCAAGAAGCGGCAAGCCAAACUGCACCAGGGCACAA-ACA-CGCAAA ............(((((((....)))).(((((((((.(((...(((..((((....))))...))).))).)))....((...))))))))..-...-)))... ( -28.00) >DroEre_CAF1 2992 103 + 1 GAAUCGGCAAAGGCGCGGCAUGAGUUUAGUGCCCGGCAUGUAAAGCUGGUGAAGCAGUUUAAGGUGCGGCAAGCCAAACUACCCCAGGGCACAA-GCG-CGCCAA ...........((((((((....))...((((((.((((.(.((((((......)))))).).))))((....))...........))))))..-.))-)))).. ( -39.20) >DroYak_CAF1 2362 103 + 1 GAAUCGGCAAAGGCGCGGCAUGAAUUCAGUGCCCGGCAUGUAAAGCUAGUGAAGGAGUUUAAGGUGCGGCAAGCCAAACUUUCUCAGGGCACAG-CCG-CGUCAA ...........((((((((.((....))(((((((((.......)))..(((..((((((..(((.......)))))))))..))))))))).)-)))-)))).. ( -42.40) >DroPer_CAF1 1894 105 + 1 GAGUCGGGCAAGGCGCGACACGAUCUCAGUGUGCGGCACAAUAACCUGGUUAAGCAGCACAAACUGCGCCAGGAGCUGCUUCGACAGGAAAAAAAACAGCGCAAC ..((((((((.(.(((.((((.......))))))).).......((((((...((((......))))))))))...))).))))).................... ( -35.40) >consensus GAAUCGGCAAAGGCGCGGCAUGAGUUGAGUGCCCGGCAUGUAAAGCUGGUGAAGCAGUUCAAGAUGCGGCAAGCCAAACUGCACCAGGGCACAA_ACA_CGCAAA ......((...(.((.(((((.......))))))).)........(((((...((((((......((.....))..))))))))))).............))... (-17.37 = -17.23 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:19 2006