| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,091,693 – 9,091,798 |
| Length | 105 |
| Max. P | 0.566867 |
| Location | 9,091,693 – 9,091,798 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 66.47 |
| Mean single sequence MFE | -34.12 |
| Consensus MFE | -11.02 |
| Energy contribution | -12.05 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.32 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566867 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9091693 105 + 27905053 AGGUCACAUGGAGGCACUGCGCAACCUAGAUUCCGAUAAGCGGAGUCGGAAGCGAAAGAGGAGCAAGAGCAACAGCGUGACCAAUAGCGGCGGGGAUGAGGCCGA .((((((.((...((.((((....(((.(((((((.....))))))).....(....)))).)).)).))..))..)))))).....((((.........)))). ( -37.30) >DroVir_CAF1 1550 87 + 1 GGGUCACUGUGAGGCACAGCGGACA---CAUCAGGAGAAGUCAGCGCGUAAACGCAAGCGCAGCGCAAGCCAAG------A---------GGACAAUUCAGUUGA ..(((.(((((...)))))..))).---..((((..((((((.((((..........)))).((....))....------.---------.)))..)))..)))) ( -23.60) >DroSec_CAF1 1365 105 + 1 AGGUCACAUUGAGGCACUGCGCAACCUAGAUUCCGAUAAGCGGAGUCGGAAGCGAAAGAGGAGCAAGAGCAACAGCGUGACCGCUGGAGGCGGGGAUGAGGCCGA .((((.((((...((.((.(((..((..(((((((.....)))))))))..))).....)).))....((..(((((....)))))...))...)))).)))).. ( -38.20) >DroSim_CAF1 1353 105 + 1 AGGUCACAUUGAGGCACUGCGCAACUUAGAUUCCGAUAAGCGGAGUCGGAAGCGAAAGAGGAGCAAGAGCAACAGCGUGACCGCUGGCGGCGGGGAUGAGGCCGA .((((((.(((..((.((..((..(((.(((((((.....)))))))..)))(....)....)).)).))..))).)))))).....((((.........)))). ( -37.50) >DroYak_CAF1 1396 105 + 1 AGGUCACAUGGAAGCCCUCCGCAACAUGGAUUCCGAUAAGCCGAGUCGGAAGCGAAAGAGGAGCAAAAGCACCAGCGAGACCGCUGGUGGCGACGAUGAGGCCGA .((((.(((.(..(((((((..........(((((((.......))))))).(....).)))).......(((((((....))))))))))..).))).)))).. ( -42.70) >DroAna_CAF1 1510 87 + 1 GGGCCAUUUGGAAGCGGUGCGGCUGUACGACUCGGAUAAGCCCAACCGAAAGCGAAAACGAAGCAAGAGCGUC---------GCU---------GAAGCGGGCGA ((((...((.((..((.(((....)))))..)).))...))))..(((..(((((.......((....)).))---------)))---------....))).... ( -25.40) >consensus AGGUCACAUGGAGGCACUGCGCAACCUAGAUUCCGAUAAGCCGAGUCGGAAGCGAAAGAGGAGCAAGAGCAACAGCGUGACCGCUGG_GGCGGGGAUGAGGCCGA .((((.(((..........(((......(((((((.....)))))))....)))........((....)).........................))).)))).. (-11.02 = -12.05 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:18 2006