Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,090,369 – 9,090,489 |
Length | 120 |
Max. P | 0.926487 |
Location | 9,090,369 – 9,090,489 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.53 |
Mean single sequence MFE | -34.31 |
Consensus MFE | -15.08 |
Energy contribution | -16.67 |
Covariance contribution | 1.59 |
Combinations/Pair | 1.26 |
Mean z-score | -2.19 |
Structure conservation index | 0.44 |
SVM decision value | 1.18 |
SVM RNA-class probability | 0.926487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9090369 120 - 27905053 AUCCCGCAUCGGGUGCUUGUCCUCCUCCACCACCAUGGCCACAUCCCCAUCGUCAUCAUCCACCACGAUGACCAUGGAGGUCUCCACUUCCUCGAUGUGAUCCGGAUCCACCAGAGCACC ...........(((((((.......(((.((.....)).((((((..(((.((((((.........)))))).)))((((.........))))))))))....))).......))))))) ( -36.14) >DroSec_CAF1 74 120 - 1 AUCCCGCAUCGGGUGCUUGUCCUCCUCCACCUCCAUGGCCGUAUCCCCAUCGUCAUCAUCCACCACGAUGACUAUGGGGGUCUCCGCUUCCUCGAUGUGAUCCGGAUCCACCACAGCACC .....((....((((...((((.....(((.((...(((.(.((((((((.((((((.........)))))).))))))))..).))).....)).)))....)))).))))...))... ( -37.70) >DroSim_CAF1 72 120 - 1 AUCCCGCAUCGGGUGCUUGUCCUCCUCCACCACCAUGGGCGUAUCCCCAUCGUCAUCAUCCACCACGAUGACUAUGGGGGUCUCCACUUCCUCGAUGUGAUCCGGAUCCACCACAGCACC (((((((((((((((..((........)).)))).((((.(.((((((((.((((((.........)))))).)))))))))))))......)))))))....))))............. ( -39.60) >DroEre_CAF1 632 120 - 1 AUCGGGCAUCGAGUGCACGUCCUCCUCCACCACAAUGGCCGCGUCCCCCUCGUCAUCAUCCACCAGGAUGACCAUGGGGGUCUCCACUUCCUCGGCGGGAUCCGGAGCCACCACAGCACC .(((.....)))((((..........(((......)))(((.(((((((((((..((((((....))))))..))))))(((...........)))))))).)))..........)))). ( -36.90) >DroYak_CAF1 72 102 - 1 AUCCGGCAUCGGGUGCUCGUCCUCCUC------------------CCCCUCGUCAUCAUCUACCACGAUGACCAUGGGGGUCUCCACUUCCUCGACGGAAUCCGGAGCCACCGCAGCACC ..(((....)))(((((((..((((.(------------------((((..((((((.........))))))...))))).......((((.....))))...))))....)).))))). ( -36.20) >DroAna_CAF1 440 102 - 1 GCCGUG---CGACAGUCUAUCUUCGUCC---------GCCGGAUCGUCGUCAUCGUCAUCCACUAAAAUCACCAUCGG---CACCCUUUCCUCUGGCAACUCC---UCUGCUAUAACAGA ((((((---.(((...........))))---------)).((((.(.((....)).)))))...............))---)...........(((((.....---..)))))....... ( -19.30) >consensus AUCCCGCAUCGGGUGCUUGUCCUCCUCCACCACCAUGGCCGCAUCCCCAUCGUCAUCAUCCACCACGAUGACCAUGGGGGUCUCCACUUCCUCGAUGUGAUCCGGAUCCACCACAGCACC ...........(((((............................((((((.((((((.........)))))).))))))........................((.....))...))))) (-15.08 = -16.67 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:17 2006