Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,082,906 – 9,083,011 |
Length | 105 |
Max. P | 0.730935 |
Location | 9,082,906 – 9,083,011 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.81 |
Mean single sequence MFE | -25.01 |
Consensus MFE | -15.44 |
Energy contribution | -16.32 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -2.08 |
Structure conservation index | 0.62 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9082906 105 - 27905053 UUCGCACACGUUCUGAAUUCUGAAUGCUGAGCAGAAUUAAGCCUGCCGUUUUUU-UCAGUGCAUUGGGCAUCGCACUUUUUCACAUCUUUUGAGUAUUGUGUGCCC ...((((.(((((........)))))..(.((((........))))).......-...))))...(((((.((((....((((.......))))...))))))))) ( -27.60) >DroSec_CAF1 197095 96 - 1 UUCGCACACUUUCUGAAUUCAAAAUG--------AAUUAAGCCUGCC-UUUUUU-UCAGUGCAUUGGGCAUCGCACUUUUUCACAUCUUUUGAGUAUUGUGUGUCC ...((((((.......((((((((((--------((....((.((((-(.....-..........)))))..)).....))))....))))))))...)))))).. ( -19.06) >DroSim_CAF1 200577 104 - 1 UUCGCACACUUUCUGAAUUCUGAAUGCUUAGCAGAACUAAGCCUUUC-UUUUUU-UCAGUGCAUUGGGCAUCGCACUUUUUCACAUCUUUUGAGUAUUGUGUGCCC ...((((......((((....(((.((((((.....))))))..)))-.....)-)))))))...(((((.((((....((((.......))))...))))))))) ( -27.00) >DroEre_CAF1 203644 95 - 1 ---------AUUACAAAUUCUGAAUGCUAGGCAGAAUUUAGCCUGCCACUUUUU-UCAGUGCAUUGGGCAUCGCAUUU-UUCACUUCUUUCGAGUAUUGUGUGCUC ---------.............(((((..(((((........)))))(((....-..))))))))(((((.((((...-(((.........)))...))))))))) ( -22.50) >DroYak_CAF1 212562 106 - 1 AUCGCACACAUUGUGAAUUCUGAAUGCUACGCAGAAUUUAGCCUGCCAAUUUUUGUCAGUGCAUUGGGCAUCGCAUUUUUUCACUUCUGUUGAGUAUUGUGUGCCC ...(((((((..(((((....((((((...((((........))))............((((.....)))).)))))).)))))(((....)))...))))))).. ( -28.90) >consensus UUCGCACACAUUCUGAAUUCUGAAUGCUAAGCAGAAUUAAGCCUGCC_UUUUUU_UCAGUGCAUUGGGCAUCGCACUUUUUCACAUCUUUUGAGUAUUGUGUGCCC ...............(((((((.........)))))))..(((((...........))).))...(((((.((((....((((.......))))...))))))))) (-15.44 = -16.32 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:16 2006