| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,062,829 – 9,062,928 |
| Length | 99 |
| Max. P | 0.633416 |
| Location | 9,062,829 – 9,062,928 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 78.51 |
| Mean single sequence MFE | -33.72 |
| Consensus MFE | -23.43 |
| Energy contribution | -23.91 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9062829 99 + 27905053 ------------CACCCUCGAUGUGGUACUCACGUGUGUAAAGUAGUAGUAGUGCACGGAAGCGCCUCGCUCCGCCAGAGCCUGGGCAUACUCGUUGGUGGGGCAGGUGAA ------------((((......(.((..((..((((..(............)..))))..))..)).)((((((((((....((((....)))))))))))))).)))).. ( -36.80) >DroVir_CAF1 228028 88 + 1 ---------------------C--ACUACUCACGUGUGUAAAGUAAUAGUAAUGCACGGAGGCGCCUCGCUCGGCCAGCGCCUGUGCAUACUCAUUGGUGGGGCAGGUGAA ---------------------.--....(((.(((((((............)))))))))).(((((.((((.(((((((....)))........)))).))))))))).. ( -30.20) >DroPse_CAF1 182759 107 + 1 GGGUAUGCCCCCCAAUCCCCU----UUACUCACAUGUUUAAAGAAGUAGUAGUGCACAGAGGCGCCUCGCUCGGCCAGCGCCUGGGCAUACUCGUUGGUGGGGCAGGUGAA .....(((((((((((...((----(((..(....)..)))))..(.((((.(((.(..((((((...((...))..)))))).)))))))))))))).))))))...... ( -37.30) >DroGri_CAF1 198120 88 + 1 ---------------------C--ACUACUCACGUGUGUAAAGUAAUAGUAAUGCACGGAGGCGCCUCGCUCGGCCAGCGCCUGUGCAUACUCGUUGGUGGGGCAGGUGAA ---------------------.--....(((.(((((((............)))))))))).(((((.((((.(((((((...((....)).))))))).))))))))).. ( -35.00) >DroWil_CAF1 184721 99 + 1 ------------CACCCACAACAUUCAACUCACGUGUGUAAAGUAAUAAUAGUGCACGGAGGCGCCUCGCUCGGCCAAAGCUUGGGCAUACUCAUUGGUGGGGCAUGUAAA ------------..(((((.........(((.((((..(............)..)))))))..((((.(((.......)))..))))..........)))))......... ( -27.20) >DroMoj_CAF1 237549 90 + 1 ---------------------UGAGCUACUCACGUGUGUAAAGUAGUAGUAAUGCACGGAGGCACCUCGCUCGGCCAGCGCCUGUGCAUAGUCGUUGGUGGGGCACGUGAA ---------------------........((((((((((...((.(((....)))))....))))...((((.(((((((.(((....))).))))))).)))))))))). ( -35.80) >consensus _____________________C__ACUACUCACGUGUGUAAAGUAAUAGUAAUGCACGGAGGCGCCUCGCUCGGCCAGCGCCUGGGCAUACUCGUUGGUGGGGCAGGUGAA ............................(((.((((..(............)..))))))).(((((.((((.(((((................))))).))))))))).. (-23.43 = -23.91 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:11 2006