Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,059,756 – 9,059,861 |
Length | 105 |
Max. P | 0.798802 |
Location | 9,059,756 – 9,059,861 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 73.61 |
Mean single sequence MFE | -35.77 |
Consensus MFE | -23.43 |
Energy contribution | -23.18 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.15 |
Mean z-score | -1.30 |
Structure conservation index | 0.66 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798802 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9059756 105 - 27905053 -----ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAAGC--AGAGCCCGACUGUGGCCAACUCAAGUUGAAUGGUUAAGUGCUUAGCCCUCAGCUUUCAG---UUCUCAGUUCU -----.(((((((((..((((....))))))))).)))).--(((((..(((((.(((((((....))))...((((((....))))))....)))..)))---))....))))) ( -35.90) >DroPse_CAF1 179221 98 - 1 UGGCCACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAUGC--AAAGCCCGAUUGCGGCCAGCUUGGGCUGAGGGGUUAAGUGGUCCAUCCCGGUCUUACG--------------- (((((((((((((.((.((((....)))).(((((((.((--...(((.......)))..)).))))))).)))))))))))).))).............--------------- ( -40.60) >DroEre_CAF1 180470 86 - 1 -----ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAAGC--AGAGCCCGACUGCGGCCAACUCAAGUUGAAUGGUUAAGUGGUUAGCCCUCA---------------------- -----.(((((((((..((((....))))))))).)))).--.(((.(..((..(.((((..((.....)).))))...)..))..)..))).---------------------- ( -28.80) >DroYak_CAF1 186921 98 - 1 -----ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAAGC--AGAGCCCGACUGUGGCCAACUCAAGUUGAAUGGUUAAGUGGUUAGCCCUCAGCUUUCAG---U-------UCU -----.(((((((((..((((....))))))))).)))).--.(.((((....).))))((((.(((((((..((((((....)))))).)))))))..))---)-------).. ( -32.50) >DroAna_CAF1 186894 110 - 1 -----ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAGGCCAGGAACCCGACUGCGGCCACCUUAAGUUGAACGGUUAAGUGGUCAGACCGAUGCCUCCUGGACUUUCCAGUUUA -----.(((((((((..((((....))))))))).))))((((((...(((((..((...))...)))))...(((....(((.....)))..)))))))))............. ( -36.70) >DroPer_CAF1 180321 98 - 1 UGGCCACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAUGC--AAAGCCCGAUUGCGGCCAACUUGGGCUGAAGGGCUAAGUGGUACACCCCGGUCUGACG--------------- ..(((((((((((((..((((....)))))))))).....--..(((((.....(((((......)))))..))))))))))))................--------------- ( -40.10) >consensus _____ACUUGGCUGCCAGCCUGUCAAGGUGCAGCUCAAGC__AGAGCCCGACUGCGGCCAACUCAAGUUGAAUGGUUAAGUGGUUAGCCCUCAGCUUACA_______________ .....(((((((((((.((((....))))((((.((..((.....))..)))))))))((((....))))...)))))))).................................. (-23.43 = -23.18 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:10 2006