Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,058,829 – 9,058,923 |
Length | 94 |
Max. P | 0.514932 |
Location | 9,058,829 – 9,058,923 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 89.32 |
Mean single sequence MFE | -18.60 |
Consensus MFE | -13.89 |
Energy contribution | -14.00 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.11 |
Structure conservation index | 0.75 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9058829 94 + 27905053 AAUGAGGUGCUUGUGCGCUGCAAAAAAGCAAAAGAAUCCAAAUAAGAAAUUGAACAUGGCUAGAAAAGCCAAAGAAAAUGCCGUGAAAAUGGGA .....(((((....)))))((......)).......((((..(((....)))..((((((...................))))))....)))). ( -19.01) >DroEre_CAF1 179364 93 + 1 AACGAGGUGCUUGUGCGCUGCAAACAAGCAAAAGAGUACAAACAAUAAAUUGGAUAAGGUUAGAAAAGCCAAGGAAAG-GCCGUGAAAAUAGGA .(((..((((((.(((..((....)).)))...))))))............................(((.......)-))))).......... ( -15.80) >DroYak_CAF1 185845 93 + 1 AACGAGGUGCUUGUGCGCUGCAAACAAGCAAAAGAGUUCAAACAAUAAAUUGGAUAGGGCUAGAAAAGCCAAGGAAAA-GCCGUGAAAAUGGGA .......(((((((.........))))))).....((((((........))))))..((((.....))))........-.((((....)))).. ( -21.00) >consensus AACGAGGUGCUUGUGCGCUGCAAACAAGCAAAAGAGUACAAACAAUAAAUUGGAUAAGGCUAGAAAAGCCAAGGAAAA_GCCGUGAAAAUGGGA .....(((((((((.........))))))............................((((.....)))).........)))............ (-13.89 = -14.00 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:09 2006