| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,052,558 – 9,052,652 |
| Length | 94 |
| Max. P | 0.922679 |
| Location | 9,052,558 – 9,052,652 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.18 |
| Mean single sequence MFE | -20.35 |
| Consensus MFE | -17.64 |
| Energy contribution | -17.58 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9052558 94 - 27905053 CUCACC---------------CG---AAA-UUAGGAAUAUUU-UUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAA------ ......---------------..---...-...((((((((.-..((((((.(((...((((((.......))))))..))).))))))...))))))))((.......))...------ ( -20.20) >DroVir_CAF1 207021 102 - 1 CCCACC-----------CCCCUGAACAAC-UGAGAAAUAUAUAUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAA------ ......-----------............-...(((((((.(((.((((((.(((...((((((.......))))))..))).)))))).))))))))))((.......))...------ ( -19.80) >DroGri_CAF1 185658 93 - 1 ---------------ACUCC-----CCUC-UGAGAAAUAUAUAUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAA------ ---------------.....-----..((-((((((((((.(((.((((((.(((...((((((.......))))))..))).)))))).))))))))))...)))))......------ ( -20.90) >DroWil_CAF1 172402 98 - 1 UUCACC---------------AG---A-U-UUGGAUAUAUU--UGUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAACGAAA ......---------------..---.-(-(((((.(((((--((((((((.(((...((((((.......))))))..))).)))))))).))))).))((.......))....)))). ( -20.10) >DroMoj_CAF1 222598 114 - 1 CCCACACCCACUCCUACUCCCACAUCCUC-UGAGAAAUAUAUAUUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAAU----- ...........................((-((((((((((.(((.((((((.(((...((((((.......))))))..))).)))))).))))))))))...))))).......----- ( -20.90) >DroAna_CAF1 177996 95 - 1 CUCACC---------------CA---AAAGUUAGGAAUAUUU-UUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAA------ ......---------------..---.......((((((((.-..((((((.(((...((((((.......))))))..))).))))))...))))))))((.......))...------ ( -20.20) >consensus CUCACC_______________AG___AAC_UGAGAAAUAUAU_UUUUGUCAUUUUGCAUGGUUUUCGGCUCAAGCCAAAGAAUUGACAAUAUAAUAUUUCGCCUUAGAAGCAAA______ .................................(((((((.....((((((.(((...((((((.......))))))..))).))))))....)))))))((.......))......... (-17.64 = -17.58 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:08 2006