Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,044,903 – 9,045,004 |
Length | 101 |
Max. P | 0.829117 |
Location | 9,044,903 – 9,045,004 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 91.07 |
Mean single sequence MFE | -21.38 |
Consensus MFE | -16.46 |
Energy contribution | -16.86 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.12 |
Mean z-score | -1.91 |
Structure conservation index | 0.77 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829117 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9044903 101 - 27905053 AGUUCUUUUAACGACCAUGUUCAAAUGUUUAAAGAUAGGAUCAAAAUUUAUUAUGUUCAUUGGAAUUU----UUUGGUGACUUAAAUGAGUUU-UUUGAGCAGGUU ............((((.(((((((.((((....)))).....((((((((((....((((..((....----))..))))....)))))))))-)))))))))))) ( -20.70) >DroSec_CAF1 158718 102 - 1 AGUUCUUUUAACGACCAUGUUUAAAUGUUUAAAGAUAGGAUCAAAAUUUAUUAUGGUCAUUAGAAUUU----UUUGGUGACUUAAAUGAGUUAAGUUUAACAGGUU .(((..((((((((((((.(((((....))))).)).)).)).....(((((..((((((((((....----))))))))))..)))))))))))...)))..... ( -20.00) >DroSim_CAF1 162141 101 - 1 AGUUCUUUUAACGACCAUGUUCAAAUGUUUAAAGAUAGGAUCAAAAUUUAUUAUGGUCAUUAGAAUUU----UUUGGUGACUUAAAUGAGUUU-UUUGAACAGGUU ............((((.(((((((.((((....)))).....((((((((((..((((((((((....----))))))))))..)))))))))-)))))))))))) ( -25.00) >DroEre_CAF1 165438 105 - 1 AGUUCUUUUACCGCCCAUGUUCAUAUAUUUAAAGAUACGAUCAAAAUUUAUUAUGUUCAUUAGAAUUUAGAAUCUGGUGACUUAAAUGAGUUU-UUCGAACAGGUU ..............((.(((((...((((....)))).((..((((((((((....((((((((........))))))))....)))))))))-)))))))))).. ( -19.00) >DroYak_CAF1 171954 101 - 1 AGUUCUUUUAAUGACCAUGUUCAAAUAUUUAAAGAUACGAUCAAAAUUUAUUAUGUUCAUUAGACUUU----UCUGGUGACUUAAAUGAGUUU-UUUGAACAGGUU ............((((.(((((((.........(((...)))((((((((((....((((((((....----))))))))....)))))))))-)))))))))))) ( -22.20) >consensus AGUUCUUUUAACGACCAUGUUCAAAUGUUUAAAGAUAGGAUCAAAAUUUAUUAUGUUCAUUAGAAUUU____UUUGGUGACUUAAAUGAGUUU_UUUGAACAGGUU ............((((.((((((((((((....))))......(((((((((....((((((((........))))))))....))))))))).)))))))))))) (-16.46 = -16.86 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:07 2006