Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,043,904 – 9,044,005 |
Length | 101 |
Max. P | 0.539161 |
Location | 9,043,904 – 9,044,005 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.62 |
Mean single sequence MFE | -32.23 |
Consensus MFE | -20.68 |
Energy contribution | -20.78 |
Covariance contribution | 0.10 |
Combinations/Pair | 1.10 |
Mean z-score | -1.43 |
Structure conservation index | 0.64 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539161 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9043904 101 - 27905053 GGC--------GCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCUGCGCAAAAUAAAUACAUACAGC-----GAUCGGACCCAUAAUG .((--------(((....))).(((.(((.(.(((((..(((((((.......)))))))))))).).--))).)))................))-----................ ( -32.20) >DroVir_CAF1 198091 88 - 1 -----------------------CUGCGCGGCGCGAUAAAGAGCAUUGGAAUUAUGUUCUGUCGCCAGUCGCUGCGCUAAAUAAAUACAUUCAGC-----GAUGUCGGCCAUAAUG -----------------------..((.(((((((((..(((((((.......))))))))))))..(((((((.................))))-----)))))))))....... ( -27.53) >DroPse_CAF1 162265 106 - 1 AGG--------GCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCCGGGCAGAAUAAAUACAUACGGCAUACAGAUUGGGUCCAUAAUG .((--------((.(((((((..(((..(((.(((((..(((((((.......)))))))))))))))--.))).))..........(....)))).......)).))))...... ( -31.31) >DroWil_CAF1 162330 101 - 1 AUG--------GCGCAUGCGCAGCGGUGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCUGCGCAAAAUAAACACAUACAGC-----GAACUCGCCCAUAAUG (((--------(....((((((((....(((.(((((..(((((((.......)))))))))))))))--))))))))...............((-----(....))))))).... ( -36.10) >DroAna_CAF1 169130 109 - 1 CGAAUCCAAUGGCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCUGCGCAAAAUAAAUACAUACAGC-----GAUCGGGCCCAUAAUG ........((((.((.((((((((....(((.(((((..(((((((.......)))))))))))))))--))))))))................(-----....).)))))).... ( -34.90) >DroPer_CAF1 163484 106 - 1 AGG--------GCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG--GCCGGGCAGAAUAAAUACAUACGGCAUACAGAUUGGGUCCAUAAUG .((--------((.(((((((..(((..(((.(((((..(((((((.......)))))))))))))))--.))).))..........(....)))).......)).))))...... ( -31.31) >consensus AGG________GCGCAUGCGCAGCGGAGCGGCGCGAUAAAGAGCGUUAAAAUUAUGUUCUGUCGCCUG__GCUGCGCAAAAUAAAUACAUACAGC_____GAUCGGGCCCAUAAUG ...........(((....)))....(.((((((((((..(((((((.......)))))))))))).....))))).)....................................... (-20.68 = -20.78 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:06 2006