Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,042,421 – 9,042,524 |
Length | 103 |
Max. P | 0.616288 |
Location | 9,042,421 – 9,042,524 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 87.84 |
Mean single sequence MFE | -25.02 |
Consensus MFE | -17.36 |
Energy contribution | -17.96 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.07 |
Mean z-score | -1.95 |
Structure conservation index | 0.69 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9042421 103 - 27905053 AAAUAUAGAAAUAGCAUGUAUACUUUGCAUGCG----------GCGAAACCCGUUUUUUUCUUUGAGGCCAUUAAAUGGGUGACUAUUUUUGGAUUGCUAUAAACAUUAUCUA .....((((....(((((((.....)))))))(----------((((..((((..........)).))(((..((((((....)))))).))).)))))..........)))) ( -25.40) >DroSec_CAF1 156251 100 - 1 AAAUAUAGAAAUAGCAUGUAUACUUUGCAUGCG----------GCGAAAC--GU-UUUUUCUUUGAGGCCAUUAAAUGGGUGACUAUUUUUGGAUUGCUAUAAACAUUAUCUA .....((((....(((((((.....)))))))(----------((((((.--..-..)))).......(((..((((((....)))))).)))...)))..........)))) ( -24.40) >DroSim_CAF1 159662 102 - 1 AAAUAUAGAAAUAGCAUGUAUACUUUGCAUGCG----------GCGAAACCCGU-UUUUUCUUUGAGGCCAUUAAAUGGGUGACUAUUUUUGGAUUGCUAUAAACAUUAUCUA .....((((....(((((((.....)))))))(----------((((..((((.-........)).))(((..((((((....)))))).))).)))))..........)))) ( -25.50) >DroEre_CAF1 163001 112 - 1 AAAUAUAGAAAUAGCAUGUGUACUUUGCAUGCGGGGUUUCAAGGCGAAACUUGU-UUAUUCUUUGAGGCCAUUAAAUUGGUACCUAUUUUUGGAUCGCUAUAAACAUUAUCUA ...(((((.....(((((((.....)))))))..((((((((((..(((....)-))...))))))))))........(((.((.......))))).)))))........... ( -26.10) >DroYak_CAF1 169584 112 - 1 AAAUAUAUAAAUAGCUUUUAUACUUUGCAUGCGGGGUUUCAAGGCGAAACUCGU-UUAUUCUUCGAGGCCAAUAAAUUGGUGACUAUUUUUGGAUCGCUAUAAACAUAAUCUA .............(((((...((((((....))))))...))))).......((-((((....(((..((((.((((.(....).)))))))).)))..))))))........ ( -23.70) >consensus AAAUAUAGAAAUAGCAUGUAUACUUUGCAUGCG__________GCGAAACCCGU_UUUUUCUUUGAGGCCAUUAAAUGGGUGACUAUUUUUGGAUUGCUAUAAACAUUAUCUA .....((((....(((((((.....)))))))...........((((...........(((...))).(((..((((((....)))))).))).))))...........)))) (-17.36 = -17.96 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:04 2006