Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,037,733 – 9,037,823 |
Length | 90 |
Max. P | 0.835203 |
Location | 9,037,733 – 9,037,823 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 75.86 |
Mean single sequence MFE | -31.95 |
Consensus MFE | -24.21 |
Energy contribution | -23.87 |
Covariance contribution | -0.34 |
Combinations/Pair | 1.28 |
Mean z-score | -0.92 |
Structure conservation index | 0.76 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.705347 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9037733 90 + 27905053 ---UUGACCAUGGCUUU-U-GCCGGCCGGUCAAGUGCCGGGACGUGUCUGUCGGAAUC---------AGAUUUAAAGUCAGACAACUUGACGCGCCCCAAGUUG ---((((((.((((...-.-))))...)))))).....(((.(((((((((((....)---------.(((.....))).))))....)))))).)))...... ( -30.70) >DroPse_CAF1 155116 101 + 1 GGAGUGGCCAUGGCAUC-UCCCCGACCGGUCAAGUGCCGGGACGUGUCUGUCAGAGUCGUCGGAUCGAGACUCAAAGUCAGACAACUUGACGCGCCC--AGUCG ((((..((....))..)-))).((((.(((.....)))(((.((((((.....(((((.(((...)))))))).((((......)))))))))))))--.)))) ( -38.90) >DroSec_CAF1 151593 90 + 1 ---UUGACCAUGGCUUU-U-GCCGGCCGGUCAAGUGCCGGGACGUGUCUGUCGCAAUC---------AGAUUUAAAGUCAGACAACUUGACGCGCCCCAAGUUA ---((((((.((((...-.-))))...)))))).....(((.((((((((((......---------.............))))....)))))).)))...... ( -30.11) >DroWil_CAF1 155015 80 + 1 GGCUUGGCCAUGGCAUCAU-GUUGGCCGGUCAAGUGCCGGGACGUGUCUGUC---------------------AAAAUCAGACAACUUGACGCACCCAAUGG-- .((((((((..(((.....-....)))))))))))...(((..(((((((((---------------------.......))))....))))).))).....-- ( -27.50) >DroAna_CAF1 162503 89 + 1 CUUUUGACCAUGGCUUU-U-GCCGGCCGGUCAAGUGCUGAGACGUGUCGGUCGGAAUC---------AGAUUUAAAGUCAGACAACUUGACGCGCCCCGA---- ...((((((.((((...-.-))))...))))))((((...(((......)))......---------.........(((((.....))))))))).....---- ( -25.60) >DroPer_CAF1 156351 101 + 1 GGAGUGGCCAUGGCAUC-UCCCCGACCGGUCAAGUGCCGGGACGUGUCUGUCAGAGUCGUCGGAUCGAGACUCAAAGUCAGACAACUUGACGCGCCC--AGUCG ((((..((....))..)-))).((((.(((.....)))(((.((((((.....(((((.(((...)))))))).((((......)))))))))))))--.)))) ( -38.90) >consensus GG_UUGACCAUGGCAUC_U_GCCGGCCGGUCAAGUGCCGGGACGUGUCUGUCGGAAUC_________AGAUUUAAAGUCAGACAACUUGACGCGCCCCAAGU_G ....(((((.((((......))))...))))).((((((((...((((((.(.(((((..........)))))...).)))))).))))..))))......... (-24.21 = -23.87 + -0.34)
Location | 9,037,733 – 9,037,823 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 75.86 |
Mean single sequence MFE | -32.52 |
Consensus MFE | -21.67 |
Energy contribution | -20.92 |
Covariance contribution | -0.75 |
Combinations/Pair | 1.19 |
Mean z-score | -1.43 |
Structure conservation index | 0.67 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835203 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9037733 90 - 27905053 CAACUUGGGGCGCGUCAAGUUGUCUGACUUUAAAUCU---------GAUUCCGACAGACACGUCCCGGCACUUGACCGGCCGGC-A-AAAGCCAUGGUCAA--- ....((((((((.(((....((((.((.((.......---------)).)).))))))).))))))))....((((((...(((-.-...))).)))))).--- ( -31.30) >DroPse_CAF1 155116 101 - 1 CGACU--GGGCGCGUCAAGUUGUCUGACUUUGAGUCUCGAUCCGACGACUCUGACAGACACGUCCCGGCACUUGACCGGUCGGGGA-GAUGCCAUGGCCACUCC ...((--((.((.(((((((((((((.(...((((((((...))).))))).).)))))).((....))))))))))).))))(((-(..((....))..)))) ( -39.50) >DroSec_CAF1 151593 90 - 1 UAACUUGGGGCGCGUCAAGUUGUCUGACUUUAAAUCU---------GAUUGCGACAGACACGUCCCGGCACUUGACCGGCCGGC-A-AAAGCCAUGGUCAA--- ....((((((((.(((..((.(((.((.......)).---------))).))....))).))))))))....((((((...(((-.-...))).)))))).--- ( -31.10) >DroWil_CAF1 155015 80 - 1 --CCAUUGGGUGCGUCAAGUUGUCUGAUUUU---------------------GACAGACACGUCCCGGCACUUGACCGGCCAAC-AUGAUGCCAUGGCCAAGCC --...((((.((.(((((((((((((.....---------------------..)))))).((....))))))))))).))))(-(((....))))........ ( -25.60) >DroAna_CAF1 162503 89 - 1 ----UCGGGGCGCGUCAAGUUGUCUGACUUUAAAUCU---------GAUUCCGACCGACACGUCUCAGCACUUGACCGGCCGGC-A-AAAGCCAUGGUCAAAAG ----..((((((.(((..(..(((.((.......)).---------)))..)....))).)))))).....(((((((...(((-.-...))).)))))))... ( -28.10) >DroPer_CAF1 156351 101 - 1 CGACU--GGGCGCGUCAAGUUGUCUGACUUUGAGUCUCGAUCCGACGACUCUGACAGACACGUCCCGGCACUUGACCGGUCGGGGA-GAUGCCAUGGCCACUCC ...((--((.((.(((((((((((((.(...((((((((...))).))))).).)))))).((....))))))))))).))))(((-(..((....))..)))) ( -39.50) >consensus C_ACUUGGGGCGCGUCAAGUUGUCUGACUUUAAAUCU_________GAUUCCGACAGACACGUCCCGGCACUUGACCGGCCGGC_A_AAAGCCAUGGCCAA_CC .......((.((.(((((((((((((.(....((((..........))))..).)))))).((....))))))))))).)).........((....))...... (-21.67 = -20.92 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:03 2006