Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,280,265 – 1,280,364 |
Length | 99 |
Max. P | 0.685603 |
Location | 1,280,265 – 1,280,364 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 82.50 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -16.14 |
Energy contribution | -16.20 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -2.01 |
Structure conservation index | 0.68 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685603 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1280265 99 + 27905053 CGGAAAUAUGCUGAUAAAAAACAAACACCCGCCCAAUUGGCACGGCCAUCGCAAUCGCAAUGGCAAUGGGAAUCCGCCAGAAGCGAUUUCCGGCUGACA (((((((.((((...............((((((.....)))...(((((.((....)).)))))...)))..((.....)))))))))))))....... ( -30.00) >DroPse_CAF1 52063 78 + 1 CGAAAAUAUGCUGAUGAAAAACAAACACUCGACCAAUUGGCAUGGCAAUCC---------------------UUUGCCAGAAGCGAUUUCCGGCUGAUA ((.((((.((((..................(.((....))).((((((...---------------------.))))))..)))))))).))....... ( -14.80) >DroSec_CAF1 50688 93 + 1 CGGAAAUAUGCUGAUAUAAAACCAACAAUCGCUCAAUUGGCACGGCCAUCGCAAUCGCAAUGGCA------AUCCGCCAGAAGCGAUUUCCGGCUGACA (((((((((....))))..........((((((...(((((...(((((.((....)).))))).------....))))).)))))))))))....... ( -27.80) >DroSim_CAF1 48215 93 + 1 CGGAAAUAUGCUGAUAAAAAACAAACAACCGCCCAAUUGGCACGGCCAUCGCAAUCGCAAUGGCA------AUCCGCCAGAAGCGAUUUCCGGCUGACA (((((((.((((..................(((.....)))...(((((.((....)).))))).------..........)))))))))))....... ( -26.30) >DroEre_CAF1 50109 86 + 1 CGGAAAUAUGCUGAUAAAAAACAAACACCCGCCCAAUUGGCACGGUAAUCGC-UUCG------CC------AUCCGCCAGAAGCGAUUUCCGGCUGACA (((...........................(((.....))).(((.((((((-((((------(.------....))..))))))))).))).)))... ( -23.10) >DroYak_CAF1 66574 87 + 1 CGGAAAUAUGCUGUAAAAAAACAAACACCCGCCUAAUUGGCACGGCAAUCGUAAUCG------CC------AUCCGCCAGAAGCGAUUUCCGGCUGACA (((((((.((((..................(((.....)))..(((..........)------))------..........)))))))))))....... ( -21.40) >consensus CGGAAAUAUGCUGAUAAAAAACAAACACCCGCCCAAUUGGCACGGCAAUCGCAAUCG______CA______AUCCGCCAGAAGCGAUUUCCGGCUGACA (((((((.((((..................(((.....)))..(((.............................)))...)))))))))))....... (-16.14 = -16.20 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:41 2006