Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,024,657 – 9,024,753 |
Length | 96 |
Max. P | 0.500000 |
Location | 9,024,657 – 9,024,753 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 84.34 |
Mean single sequence MFE | -19.02 |
Consensus MFE | -12.98 |
Energy contribution | -13.17 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.17 |
Mean z-score | -1.46 |
Structure conservation index | 0.68 |
SVM decision value | -0.08 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9024657 96 - 27905053 CCAGCUGGGAAAACCCGAACUCUGCUUCCCAAUUUCCCUC-UUUCUAUAGCAA-AAAAAAAAAAAAAAAACGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((..............)))))).((((.(((-(((..((.((..-..................)).))..)))))).))))...)))). ( -16.09) >DroSec_CAF1 138624 85 - 1 CCAGCUGGGAAAACCAGAACUCUGCUUCCCAAUUUCCCUCUUUUCUAUCGCAA-A------------AAACGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((...(((....))).)))))).((((.((((((...((.((..-.------------.....)).))..)))))).))))...)))). ( -20.70) >DroSim_CAF1 141932 85 - 1 CCAGCUGGGAAAACCCGAACUCUGCUUCCCAAUUUCCCCCCUUUCUAUCGCAA-A------------AAAUGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((..............)))))).((((..((((((..((.((..-.------------.....)).))..)))))).))))...)))). ( -18.74) >DroYak_CAF1 151627 84 - 1 CCAGCUGGGAAAACCCGAACUCUGCUUCCCA--UUCCCCUUUCCCUGUCGUAGCA------------AGAGGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((..............))))))--(((((((((((((.(.......------------).))))......)))))).)))....)))). ( -20.54) >consensus CCAGCUGGGAAAACCCGAACUCUGCUUCCCAAUUUCCCCCUUUUCUAUCGCAA_A____________AAACGGCAAUUUAAAGGGCGAAAAUAUUGGU ((((.((((((..............)))))).((((.((((((...((.((.....................)).))..)))))).))))...)))). (-12.98 = -13.17 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:00 2006