Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,005,035 – 9,005,126 |
Length | 91 |
Max. P | 0.949197 |
Location | 9,005,035 – 9,005,126 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 96.48 |
Mean single sequence MFE | -19.80 |
Consensus MFE | -18.86 |
Energy contribution | -18.82 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.45 |
Structure conservation index | 0.95 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949197 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9005035 91 - 27905053 CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCCCUGCAGAAACCCAACAAGUUUCAUCUGCAGA ......((((((((.((..(.(((.((....)).))).)..)))))))))).........((((((((((.......)))...))))))). ( -21.70) >DroSec_CAF1 119269 91 - 1 CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUUUCGAUAUUUUGGGACUUGCCACAUGUCCCUGUAGAAACCCAACAAGUUUCAUCUGCAGA ....((((((((.........)))))))).............(((((.........)))))(((((((((.......)))...)))))).. ( -18.40) >DroSim_CAF1 122475 91 - 1 CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCCCUGUAGAAACCCAACAAGUUUCAUCUGCAGA ....((((((((.........)))))))).(((.(((.....(((((.........)))))....(((((.......)))))))).))).. ( -20.20) >DroEre_CAF1 125147 91 - 1 CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCCCUGCAAAAGCCCAACAAGUUUCAGCUGCAGA ....((((((((.........))))))))..((.((.((((..((((((((...........)))..)))))...)))).)).))...... ( -18.40) >DroYak_CAF1 130417 91 - 1 CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCUCUGUAGAAGCCCAACAAGUUUCAUCUGCAGA ....((((((((.........)))))))).(((.(((..((((((((((.(.(((......))).)))))))..))))....))).))).. ( -20.30) >consensus CUAAAUGCAAGUCUUCAUUAAAUUUGCAUAUGUCGAUAUUUUGGGGCUUGCCACAUGUCCCUGUAGAAACCCAACAAGUUUCAUCUGCAGA ......((((((((.((..(.(((.((....)).))).)..)))))))))).........((((((((((.......)))...))))))). (-18.86 = -18.82 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:52 2006