Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,002,140 – 9,002,238 |
Length | 98 |
Max. P | 0.782138 |
Location | 9,002,140 – 9,002,238 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.20 |
Mean single sequence MFE | -25.97 |
Consensus MFE | -21.13 |
Energy contribution | -21.38 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -2.41 |
Structure conservation index | 0.81 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.782138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9002140 98 - 27905053 CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCUCUGUGCAAU-GGAGUUUAUUUCAUAUUUGCAGCCAACCA ..(((((((..(((.(((.((((((((.....)))))))).)))))))))(((.....((((((...))-)))).....)))......))))....... ( -26.80) >DroSec_CAF1 116358 98 - 1 CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCUCUGUGCAGU-GGAGUUUAUUUCAUAUUUGCAGCCAACCA ..(((((((..(((.(((.((((((((.....)))))))).)))))))))(((.....((((.......-)))).....)))......))))....... ( -26.70) >DroSim_CAF1 119560 98 - 1 CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCUCUGUGCAGU-GGAGUUUAUUUCAUAUUUGCAGCCAACCA ..(((((((..(((.(((.((((((((.....)))))))).)))))))))(((.....((((.......-)))).....)))......))))....... ( -26.70) >DroEre_CAF1 122291 98 - 1 CCCAACGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCACUGUGCAGU-GGAGCUUAUUUCAUAUUUGCAGCCAACCA .....((((..(((.(((.((((((((.....)))))))).))))))))))......(((((....)))-)).((..((.....))..))......... ( -24.40) >DroYak_CAF1 127515 98 - 1 CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCACUGUGCAGU-GGAGUUUAUUUCAUAUUUGCAGCCAACCA ..(((((((..(((.(((.((((((((.....)))))))).)))))))))((((...(((((....)))-)).))))...........))))....... ( -28.60) >DroAna_CAF1 127492 96 - 1 GCCUCCGGCAACUGUUCUCGCAACAUUAUUAAAAUGUUGUCAGGAAUUCCGUACAAGUCGCUACGCAGUUGCAGUAUAUCUCAUAUUUGCAA--AACC- ((.....(((((((((((.((((((((.....)))))))).))))....((((........)))))))))))(((((.....))))).))..--....- ( -22.60) >consensus CCCUGCGGAAAAUGUCCUCGCAACAUUAUUAAAAUGUUGUCAGGCAUUCCGAACAAGUCUCUGUGCAGU_GGAGUUUAUUUCAUAUUUGCAGCCAACCA .....(((((..((.(((.((((((((.....)))))))).))))))))))............(((((...(((.....)))....)))))........ (-21.13 = -21.38 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:51 2006