Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,996,600 – 8,996,691 |
Length | 91 |
Max. P | 0.522740 |
Location | 8,996,600 – 8,996,691 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.44 |
Mean single sequence MFE | -33.95 |
Consensus MFE | -22.07 |
Energy contribution | -23.15 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.13 |
Mean z-score | -2.57 |
Structure conservation index | 0.65 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522740 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8996600 91 + 27905053 CCGCCCAGCCUCUGUCUCGUCUUGGCAGCAAAAUGACAAAUCGAGGCAGGCAGAC----UGCAGCCGUUGCGGAGGCAGGG--CAAACAUGUGAAGA ..((((.((((((((((((..(((.((......)).)))..))))((((.....)----))).......)))))))).)))--)............. ( -37.10) >DroSec_CAF1 110698 91 + 1 CCGCCCAGCCUCUGUCUCGUCUUGGCAGCAAAAUGACAAAUCGAGGCAGGCAGAC----UGCAGCCAUUGCGGAGGCAGGG--CAAACAUGUGAAGA ..((((.((((((((((((..(((.((......)).)))..))))((((.....)----))).......)))))))).)))--)............. ( -37.10) >DroSim_CAF1 113852 91 + 1 CCGCCCAGCCUCUGUCUCGUCUUGGCAGCAAAAUGACAAAUCGAGGCAGGCAGAC----UGCAGCCAUUGCGGAGGCAGGG--CAAACAUGUGAAGA ..((((.((((((((((((..(((.((......)).)))..))))((((.....)----))).......)))))))).)))--)............. ( -37.10) >DroEre_CAF1 116333 91 + 1 CCGCCCAGCCUCUGUCUCGUCUUGGCAGCGAAAUGACAAAUCGAGGCAGGCAGAC----UGCAGCCGUUGCGGAGGCUGGG--CAAACAUGUGAAGA ..(((((((((((((((((..(((.((......)).)))..))))((((.....)----))).......))))))))))))--)............. ( -42.40) >DroWil_CAF1 115056 86 + 1 -----------CUAUUUUUUCUUGGCAGCCAAAUGACAAAUCGAGGCAGGCAGACUGACUGCAACAACAACAGAGACAACAACCACAUAUCGGCUAA -----------...........((((.(((...(((....))).)))..((((.....))))..............................)))). ( -12.40) >DroYak_CAF1 121742 91 + 1 CUGCCCAGCCUCUGUCUCGUCUUGGCAGCAAAAUGACAAAUCGAGGCAGGCAGAC----UGCAGCCGUUGCGGAGGCAGGG--CAAACAUGUGAAGA .(((((.((((((((((((..(((.((......)).)))..))))((((.....)----))).......)))))))).)))--))............ ( -37.60) >consensus CCGCCCAGCCUCUGUCUCGUCUUGGCAGCAAAAUGACAAAUCGAGGCAGGCAGAC____UGCAGCCAUUGCGGAGGCAGGG__CAAACAUGUGAAGA ...(((.((((((((((((..(((.((......)).)))..))))))..(((.......))).........)))))).)))................ (-22.07 = -23.15 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:49 2006