Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,994,272 – 8,994,365 |
Length | 93 |
Max. P | 0.930581 |
Location | 8,994,272 – 8,994,365 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 98.28 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -24.48 |
Energy contribution | -24.52 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.49 |
Structure conservation index | 0.96 |
SVM decision value | 1.15 |
SVM RNA-class probability | 0.923172 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8994272 93 + 27905053 AUGGAAACAAAUUGGAUUGUCGGGCUUUACCGAAGCCCUAACUGCAAAUAUCUGGUAUUUGCACAUUGCAGUUGCAUUUAUUGAAAGUGGCUG .((....))............(((((((...)))))))....(((((((((...))))))))).....((((..(.(((....))))..)))) ( -25.10) >DroSec_CAF1 108387 93 + 1 GUGGAAACAAAUUGGAUUGUCGGGCUUUACCGAAGCCCUAACUGCAAAUAUCUGGUAUUUGCACAUUGCAGUUGCAUUCAUUGAAAGUGGCUG .((....))............(((((((...)))))))....(((((((((...))))))))).....((((..(.(((...))).)..)))) ( -26.40) >DroSim_CAF1 111526 93 + 1 GUGGAAACAAAUUGGAUUGUCGGGCUUUACCGAAGCCCUAACUGCAAAUAUCUGGUAUUUGCACAUUGCAGUUGCAUUCAUUGAAAGUGGCUG .((....))............(((((((...)))))))....(((((((((...))))))))).....((((..(.(((...))).)..)))) ( -26.40) >DroEre_CAF1 113652 93 + 1 GUGGAAACAAAUUGGAUUGUCGGGCUUUACCGAAGCCCUAACUGCAAAUAUCUGGUAUUUGCACAUUGCAGUUGCAUUCAUUGAAAGUGGCUG .((....))............(((((((...)))))))....(((((((((...))))))))).....((((..(.(((...))).)..)))) ( -26.40) >DroYak_CAF1 115044 93 + 1 GUGGAAACAAAUUGGAUCGUCGGGCUUUACCGAAGCCCUAACUGCAAAUAUCUGGUAUUUGCACAUUGCAGUUGCAUUCAUUGAAAAUGGCUG .((....)).........((((((((((...)))))))(((((((((.....((((....)).)))))))))))..............))).. ( -23.40) >consensus GUGGAAACAAAUUGGAUUGUCGGGCUUUACCGAAGCCCUAACUGCAAAUAUCUGGUAUUUGCACAUUGCAGUUGCAUUCAUUGAAAGUGGCUG .((....))............(((((((...)))))))....(((((((((...))))))))).....((((..(.(((...))).)..)))) (-24.48 = -24.52 + 0.04)
Location | 8,994,272 – 8,994,365 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 98.28 |
Mean single sequence MFE | -21.02 |
Consensus MFE | -20.80 |
Energy contribution | -20.64 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.44 |
Structure conservation index | 0.99 |
SVM decision value | 1.21 |
SVM RNA-class probability | 0.930581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8994272 93 - 27905053 CAGCCACUUUCAAUAAAUGCAACUGCAAUGUGCAAAUACCAGAUAUUUGCAGUUAGGGCUUCGGUAAAGCCCGACAAUCCAAUUUGUUUCCAU .................(((....)))...((((((((.....))))))))....((((((.....))))))(((((......)))))..... ( -20.70) >DroSec_CAF1 108387 93 - 1 CAGCCACUUUCAAUGAAUGCAACUGCAAUGUGCAAAUACCAGAUAUUUGCAGUUAGGGCUUCGGUAAAGCCCGACAAUCCAAUUUGUUUCCAC .................(((....)))...((((((((.....))))))))....((((((.....))))))(((((......)))))..... ( -20.70) >DroSim_CAF1 111526 93 - 1 CAGCCACUUUCAAUGAAUGCAACUGCAAUGUGCAAAUACCAGAUAUUUGCAGUUAGGGCUUCGGUAAAGCCCGACAAUCCAAUUUGUUUCCAC .................(((....)))...((((((((.....))))))))....((((((.....))))))(((((......)))))..... ( -20.70) >DroEre_CAF1 113652 93 - 1 CAGCCACUUUCAAUGAAUGCAACUGCAAUGUGCAAAUACCAGAUAUUUGCAGUUAGGGCUUCGGUAAAGCCCGACAAUCCAAUUUGUUUCCAC .................(((....)))...((((((((.....))))))))....((((((.....))))))(((((......)))))..... ( -20.70) >DroYak_CAF1 115044 93 - 1 CAGCCAUUUUCAAUGAAUGCAACUGCAAUGUGCAAAUACCAGAUAUUUGCAGUUAGGGCUUCGGUAAAGCCCGACGAUCCAAUUUGUUUCCAC ..((.((((.....))))))((((((((....(........)....)))))))).((((((.....))))))(((((......)))))..... ( -22.30) >consensus CAGCCACUUUCAAUGAAUGCAACUGCAAUGUGCAAAUACCAGAUAUUUGCAGUUAGGGCUUCGGUAAAGCCCGACAAUCCAAUUUGUUUCCAC .................(((....)))...((((((((.....))))))))....((((((.....))))))(((((......)))))..... (-20.80 = -20.64 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:48 2006