| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,992,392 – 8,992,493 |
| Length | 101 |
| Max. P | 0.756814 |
| Location | 8,992,392 – 8,992,493 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -15.06 |
| Energy contribution | -15.57 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8992392 101 + 27905053 UGGGCGUUUCUC----UUUGCAAGAGUGUGU--UUGUGCCCCUGGCACAUGUUUUUCUAACAAUCACACAAUGUUUAUACAACAGAAACUUUUUAUAUGCCGCUCA------U ((((((......----...(((...(((((.--.((((((...))))))((((.....))))..)))))..((((.....)))).............)))))))))------. ( -23.90) >DroVir_CAF1 132083 112 + 1 UGUGCGUGUGUGGGUGAGUAUGUGAAUGUUUUUGUAUGCCAGCGGCACAUGUUUUUCUAACAAUCACACAAUGUUUAUACAACAG-AACUUUUUACACGCAUCCCGGCCAAAG .((((((((((.(.((.(((((..((....))..))))))).).)))).((((.....((((.........)))).....)))).-..........))))))........... ( -25.50) >DroSim_CAF1 109597 101 + 1 UGGGCGUUUCUC----UUUGGAAGAGUGUAU--UUGUGCCCCUGGCACAUGUUUUUCUAACAAUCACACAAUGUUUAUACAACAGAAACUUUUUAUAUGCCGCUCA------U ((((((......----...(((((.((((..--.((((((...))))))((((.....))))...))))..((((.....))))....))))).......))))))------. ( -22.69) >DroEre_CAF1 111724 101 + 1 UGGGCGAUUCUC----UUUGCAUGAGUGUAU--UUGUGCCCCUGGCACAUGUUUUUCUAACAAUCACACAAUGUUUAUACAACAGAAACUUUUUAUAUGCCGCUCA------U ((((((......----...(((((.((((..--.((((((...))))))((((.....))))...))))..((((.....))))...........)))))))))))------. ( -23.70) >DroYak_CAF1 113102 103 + 1 UGGGCGUUUCUUCU--UUUGCAUGAGUGUGU--UUGUGCCACUGGCACAUGUUUUUCUAACAAUCACACAAUGUUUAUACAACAGAAACUUUUUAUAUGCCGCUCA------U ((((((........--...(((((.(((((.--.((((((...))))))((((.....))))..)))))..((((.....))))...........)))))))))))------. ( -25.80) >DroAna_CAF1 117503 87 + 1 GGGGCGUUCCU------------------GU--UUGUGCCCCUGGCACAUGUUUUUCUAACAAUCACACAAUGUUUAUACAACUGAAACUUUUUAUUCGCCGCUCA------U (.((((.....------------------((--(((((((...))))).((((.....)))).......................))))........)))).)...------. ( -17.12) >consensus UGGGCGUUUCUC____UUUGCAUGAGUGUGU__UUGUGCCCCUGGCACAUGUUUUUCUAACAAUCACACAAUGUUUAUACAACAGAAACUUUUUAUAUGCCGCUCA______U ..((((...................((((.....((((((...))))))((((.....))))...))))..(((....)))................))))............ (-15.06 = -15.57 + 0.50)
| Location | 8,992,392 – 8,992,493 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.05 |
| Mean single sequence MFE | -23.79 |
| Consensus MFE | -16.77 |
| Energy contribution | -16.92 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756814 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8992392 101 - 27905053 A------UGAGCGGCAUAUAAAAAGUUUCUGUUGUAUAAACAUUGUGUGAUUGUUAGAAAAACAUGUGCCAGGGGCACAA--ACACACUCUUGCAAA----GAGAAACGCCCA .------...(.(((.........((((((.(((((........(((((..((((.....))))((((((...)))))).--.)))))...))))).----.)))))))))). ( -25.60) >DroVir_CAF1 132083 112 - 1 CUUUGGCCGGGAUGCGUGUAAAAAGUU-CUGUUGUAUAAACAUUGUGUGAUUGUUAGAAAAACAUGUGCCGCUGGCAUACAAAAACAUUCACAUACUCACCCACACACGCACA ............(((((((........-.((((.....)))).(((((((.((((.(.....).((((((...))))))....)))).))))))).........))))))).. ( -26.30) >DroSim_CAF1 109597 101 - 1 A------UGAGCGGCAUAUAAAAAGUUUCUGUUGUAUAAACAUUGUGUGAUUGUUAGAAAAACAUGUGCCAGGGGCACAA--AUACACUCUUCCAAA----GAGAAACGCCCA .------.....(((((((......(((((((..((((.....))))..))....)))))...)))))))..((((....--.....((((.....)----)))....)))). ( -21.52) >DroEre_CAF1 111724 101 - 1 A------UGAGCGGCAUAUAAAAAGUUUCUGUUGUAUAAACAUUGUGUGAUUGUUAGAAAAACAUGUGCCAGGGGCACAA--AUACACUCAUGCAAA----GAGAAUCGCCCA .------...(.(((..............((((.....))))((((((((.((((.....))))((((((...)))))).--......)))))))).----.......)))). ( -22.40) >DroYak_CAF1 113102 103 - 1 A------UGAGCGGCAUAUAAAAAGUUUCUGUUGUAUAAACAUUGUGUGAUUGUUAGAAAAACAUGUGCCAGUGGCACAA--ACACACUCAUGCAAA--AGAAGAAACGCCCA .------...(.(((.........((((((.((((((.......(((((..((((.....))))((((((...)))))).--.)))))..)))))).--...)))))))))). ( -26.00) >DroAna_CAF1 117503 87 - 1 A------UGAGCGGCGAAUAAAAAGUUUCAGUUGUAUAAACAUUGUGUGAUUGUUAGAAAAACAUGUGCCAGGGGCACAA--AC------------------AGGAACGCCCC .------.....((((........((((((((..((((.....))))..))))......)))).((((((...)))))).--..------------------.....)))).. ( -20.90) >consensus A______UGAGCGGCAUAUAAAAAGUUUCUGUUGUAUAAACAUUGUGUGAUUGUUAGAAAAACAUGUGCCAGGGGCACAA__ACACACUCAUGCAAA____GAGAAACGCCCA ..........(.(((...............(((.....)))...(((((..((((.....))))((((((...))))))....)))))....................)))). (-16.77 = -16.92 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:46 2006