Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,279,716 – 1,279,825 |
Length | 109 |
Max. P | 0.737567 |
Location | 1,279,716 – 1,279,825 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 82.39 |
Mean single sequence MFE | -25.91 |
Consensus MFE | -16.25 |
Energy contribution | -19.49 |
Covariance contribution | 3.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.02 |
Structure conservation index | 0.63 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737567 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1279716 109 - 27905053 AAGAACCAAAUUUGCCGAAAGUUCAGCCAUUAAUUCAUCCACUUUAGUUGGACUCGCAGAGAAUUUGUAUGGGGCAAAGUGCACUGAAAAGUGCACCGAGCACAUACUU ..........(((((....((((((((...................)))))))).)))))......(((((..((...(((((((....)))))))...)).))))).. ( -30.41) >DroSec_CAF1 50215 109 - 1 AAGAACCAAAUUUGCCCAAAGUUCAGCCAUUAAUUCAUCCACUUUAGUUGGACUCGCAGAGAAUUUGUCUGGAGCAAAGUGCACUGAAAAGUGCACUGAGCACACACUU .(((......(((((....((((((((...................)))))))).))))).......)))...((..((((((((....))))))))..))........ ( -29.83) >DroSim_CAF1 47657 109 - 1 AAGAACCAAAUUUGCCCAAAGUUCAGCCAUUAAUUCAUCCACUUUAGUUGGACUCGCAGAGAAUUUGUCUGCAGCAAAGUGCACUGAAAAGUGCACUGAGCACACACUU ...................((((((((...................)))))))).(((((.......))))).((..((((((((....))))))))..))........ ( -30.11) >DroEre_CAF1 49620 109 - 1 AAGAGACAAAUUUGCCCAAAGUUCAGCCAUUAAUUCAUCCACUUUAGUCGGACUCCAGCCGCAUUUGUCUGGCGCAAAGUUCACUGAAAAGUGCACUGAGCACACACUU ....................((((((..............(((((.(((((((.............)))))))..))))).((((....))))..))))))........ ( -24.02) >DroYak_CAF1 66088 86 - 1 ---------AUUUGA-CAAAGUUCAGCCAUUAAUUCAUCCACUUUGGUUGCACUCCAAAAAAAUUCG-CUGGGGC------------AAAGUGCACUGAACACACAUUU ---------......-....(((((((((...............))).(((((((((..........-.)))...------------..))))))))))))........ ( -15.16) >consensus AAGAACCAAAUUUGCCCAAAGUUCAGCCAUUAAUUCAUCCACUUUAGUUGGACUCGCAGAGAAUUUGUCUGGAGCAAAGUGCACUGAAAAGUGCACUGAGCACACACUU ......(((((((......((((((((...................))))))))......)))))))......((..((((((((....))))))))..))........ (-16.25 = -19.49 + 3.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:40 2006