Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,990,512 – 8,990,603 |
Length | 91 |
Max. P | 0.950030 |
Location | 8,990,512 – 8,990,603 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 88.14 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -23.38 |
Energy contribution | -25.18 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.80 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8990512 91 + 27905053 UCGCUUUGGAAGUUUUUCAGGUGUACUA------CUUGCGACUGCAUGCAAAUGCUCCGCAUGAGCAUUGUGCAACGGCAGUUGCAAUUCACACACA .....(((((.....)))))((((....------.((((((((((.(((((((((((.....))))))).))))...)))))))))).....)))). ( -33.50) >DroSec_CAF1 104583 97 + 1 UCGCUAUGGAAGUUUUUCAGGUGUAUUAGCAACCGUUGCGACUGCAUGCAAAUGCUCCGCAUGAGCAUUGUGCAACGGCAGUUGCAAUUCACACACA ......((((.....))))(((((....)).)))(((((((((((.(((((((((((.....))))))).))))...)))))))))))......... ( -33.10) >DroSim_CAF1 107693 97 + 1 UCGCUAUGAAAGUUUUUCAGGUGUAUUAGCAACGGUUGCGACUGCAUGCAAAUGCACCGCAUGAGCAUUGUGCAACGGCAGUUGCAAUUCACACACA ......((((.((((....((((((((.(((.((((....))))..))).))))))))....))))....((((((....)))))).))))...... ( -29.80) >DroEre_CAF1 109891 97 + 1 UCCCUAUGGUUAUUUUUCAGGUGUAUAAGCAACGUAAGCGACUGGAUGCAAAUGCUCCGCAUGAGCAUUGUGCAGCGGCAGUUGCAAUUCACACACA ....................((((....((...))..(((((((..(((((((((((.....))))))).))))....))))))).....))))... ( -25.10) >DroYak_CAF1 111228 97 + 1 UCCUUAUGGUUAUUUUUCAGGUGUAUUAGCAACGUAAACGACUGCAUGCAAAUGCUCCGCAUGAGCUCUGUGCAACGGCAGUUGCAAUUCACACACA .((....))...........(((.(((.(((.((....))(((((.((((...((((.....))))....))))...))))))))))).)))..... ( -23.90) >consensus UCGCUAUGGAAGUUUUUCAGGUGUAUUAGCAACGGUUGCGACUGCAUGCAAAUGCUCCGCAUGAGCAUUGUGCAACGGCAGUUGCAAUUCACACACA ....................((((...........((((((((((.(((((((((((.....))))))).))))...))))))))))...))))... (-23.38 = -25.18 + 1.80)
Location | 8,990,512 – 8,990,603 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 88.14 |
Mean single sequence MFE | -28.40 |
Consensus MFE | -23.08 |
Energy contribution | -24.00 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.12 |
Mean z-score | -1.85 |
Structure conservation index | 0.81 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.890074 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8990512 91 - 27905053 UGUGUGUGAAUUGCAACUGCCGUUGCACAAUGCUCAUGCGGAGCAUUUGCAUGCAGUCGCAAG------UAGUACACCUGAAAAACUUCCAAAGCGA ...(((((..((((.(((((...((((.(((((((.....))))))))))).))))).)))).------...))))).................... ( -31.00) >DroSec_CAF1 104583 97 - 1 UGUGUGUGAAUUGCAACUGCCGUUGCACAAUGCUCAUGCGGAGCAUUUGCAUGCAGUCGCAACGGUUGCUAAUACACCUGAAAAACUUCCAUAGCGA ..((((.(((((((.(((((...((((.(((((((.....))))))))))).))))).))))(((.((......)).)))......))))))).... ( -30.40) >DroSim_CAF1 107693 97 - 1 UGUGUGUGAAUUGCAACUGCCGUUGCACAAUGCUCAUGCGGUGCAUUUGCAUGCAGUCGCAACCGUUGCUAAUACACCUGAAAAACUUUCAUAGCGA .(..(((((.(((((..(((...(((((...((....)).)))))...)))))))))))))..).((((((.......((((.....)))))))))) ( -26.61) >DroEre_CAF1 109891 97 - 1 UGUGUGUGAAUUGCAACUGCCGCUGCACAAUGCUCAUGCGGAGCAUUUGCAUCCAGUCGCUUACGUUGCUUAUACACCUGAAAAAUAACCAUAGGGA .((((((((...(((((.((.((((((.(((((((.....))))))))))....))).))....)))))))))))))...........((....)). ( -28.20) >DroYak_CAF1 111228 97 - 1 UGUGUGUGAAUUGCAACUGCCGUUGCACAGAGCUCAUGCGGAGCAUUUGCAUGCAGUCGUUUACGUUGCUAAUACACCUGAAAAAUAACCAUAAGGA .((((((.....(((((.((..(((((((((((((.....)))).))))..)))))..))....)))))..))))))...........((....)). ( -25.80) >consensus UGUGUGUGAAUUGCAACUGCCGUUGCACAAUGCUCAUGCGGAGCAUUUGCAUGCAGUCGCAAACGUUGCUAAUACACCUGAAAAACUUCCAUAGCGA .((((((...((((.(((((...((((.(((((((.....))))))))))).))))).)))).........)))))).................... (-23.08 = -24.00 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:44 2006