Locus 3337

Sequence ID 3R_DroMel_CAF1
Location 8,980,828 – 8,980,931
Length 103
Max. P 0.670676
window5375

overview

Window 5

Location 8,980,828 – 8,980,931
Length 103
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 71.79
Mean single sequence MFE -21.17
Consensus MFE -1.34
Energy contribution -2.34
Covariance contribution 1.00
Combinations/Pair 1.38
Mean z-score -1.60
Structure conservation index 0.06
SVM decision value 0.29
SVM RNA-class probability 0.670676
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8980828 103 - 27905053
GCUUUAAGGAAUAAAAUUCGUAUGAAUGCGAACA---UAAUAAAUUUUUGAGAUGAAAAUUUAGCGUUCGUAAAACAGCUGAUGAGCAGAAUUAUGUCUUAAUGCA
((.((((((.....(((((.......(((((((.---...(((((((((.....)))))))))..))))))).....(((....))).)))))...)))))).)). ( -24.90)
>DroSec_CAF1 95031 103 - 1
GCCUUAAAGAAUACAAUUUGUAUGAAUGUGAACA---UCAUACAUUUUUGAUUUGAUGAUUUUGCGGUCGUAAAACAGCUGAUGAGCAGAAUUAUGUCUUAAUGCA
((.((((.((...(((..(((((((.((....))---)))))))...))).....((((((((((.(((((......)).)))..)))))))))).)))))).)). ( -26.20)
>DroSim_CAF1 98059 103 - 1
GCCUUAAAGAAUACAAUUUGUAUGAAUGCGAACA---UCAUACAUUUUUGAUUUGAUGAUUUUGCGUUCGUAAAACAUCUGAUGAGCAGAAUUAUGUCUUAAUGCA
((.((((.((..........((((((((((((((---(((..((....))...)))))..)))))))))))).....((((.....))))......)))))).)). ( -24.00)
>DroEre_CAF1 100454 97 - 1
GCUUUAAGGAAUGCAAUUUGCAAGAUUUGGAACAUCGUCAUUAAUUUUUGAUAUACCAAGUUCGCAUUCGUAAAACAACUGUAGAG---------AUUUUCAAACA
.(((((((((((((((((((...(((.......)))((((........))))....)))))).))))))(.....)..)).)))))---------........... ( -14.70)
>DroYak_CAF1 101597 97 - 1
GCUUUAAAGAAUCAAAUUUGUAGGGUUCUGGACAGCAUCAUACAUAUUUGAUAUGGUAAUUUCACAUUCGUUUAACAGCAUUAGAG---------AUUUUCCAAAA
..........(((((((.((((.(((.((....)).))).)))).))))))).(((.((((((....................)))---------)))..)))... ( -16.05)
>consensus
GCUUUAAAGAAUACAAUUUGUAUGAAUGCGAACA___UCAUACAUUUUUGAUAUGAUAAUUUCGCGUUCGUAAAACAGCUGAUGAGCAGAAUUAUGUCUUAAUGCA
....................(((((.((((((((...(((........)))..)).....)))))).))))).................................. ( -1.34 =  -2.34 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:42 2006