Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,975,937 – 8,976,036 |
Length | 99 |
Max. P | 0.857125 |
Location | 8,975,937 – 8,976,036 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.30 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -21.62 |
Energy contribution | -22.57 |
Covariance contribution | 0.95 |
Combinations/Pair | 1.23 |
Mean z-score | -1.46 |
Structure conservation index | 0.68 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8975937 99 + 27905053 --UGGUAUCC-UGCCGAUUCGUGUUCAACAAAUCACUUUGCCGGCGCAACACUUUAAUGUUGGGGAUUAGGCAUUAAGGUGAGAUUUCCAAGUGUUUC---------------AUGC --(((.(((.-.((((....(((..........))).....))))....((((((((((((........)))))))))))).)))..)))........---------------.... ( -23.90) >DroVir_CAF1 111020 116 + 1 CAUAGUCCGCUGGUCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCAGGGAUUAGGCAUUAACGUGAGAUUUGCCAGCGUGCGUCCUCGUUCCUUUUAUUG- ....(..(((((((....((((...(((((((....)))))))..))))(((.((((((((........)))))))).)))......)))))))..)...................- ( -33.40) >DroPse_CAF1 95198 114 + 1 --CAGUAUGC-GGCCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCUGGGAUUAGGCAUUACGGUGAGAUUUCCCUGUGUGCGUUACGGUUACGGUUGCCGC --......((-(((.(((.((.((.(((((((....)))))))(((((.((((.(((((((((....))))))))).))))((......)).))))).....)).)).))).))))) ( -36.80) >DroWil_CAF1 95071 94 + 1 --CACUGUGU-GGCCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCAGGGAUUAGGCAUUAAGGUGAGAUUUGCCAGUGUGC-------------------- --(((((.(.-.(...((((((...(((((((....)))))))..))))((((((((((((........))))))))))))))..)..))))))...-------------------- ( -30.50) >DroAna_CAF1 95850 99 + 1 --CAGCAUGC-GGUCGCUUUGUAUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCAGGGAUUAGGCAUUAAGGUGAGACUUCCCAGGGUCUA---------------GUCA --..((((((-((.....)))))).(((((((....)))))))..))..((((((((((((........))))))))))))(((((......))))).---------------.... ( -30.20) >DroPer_CAF1 96437 114 + 1 --CAGUAUGC-GGCCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCUGGGAUUAGGCAUUACGGUGAGAUUUCCCUGUGUGCGUUACGGUUACGGUUGCCGC --......((-(((.(((.((.((.(((((((....)))))))(((((.((((.(((((((((....))))))))).))))((......)).))))).....)).)).))).))))) ( -36.80) >consensus __CAGUAUGC_GGCCGCUUUGUCUACAACAAAUCACUUUGUUGGCGCAACACUUUAAUGUCAGGGAUUAGGCAUUAAGGUGAGAUUUCCCAGUGUGCG_______________CUGC ....((((((.((.....((((...(((((((....)))))))..))))((((((((((((........)))))))))))).......)).)))))).................... (-21.62 = -22.57 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:41 2006