Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,955,925 – 8,956,018 |
Length | 93 |
Max. P | 0.662275 |
Location | 8,955,925 – 8,956,018 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 93.50 |
Mean single sequence MFE | -23.92 |
Consensus MFE | -21.54 |
Energy contribution | -21.82 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.05 |
Mean z-score | -1.22 |
Structure conservation index | 0.90 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662275 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8955925 93 + 27905053 AUUCCAUUGUGAGGCCACAUUGUGUCUUAAUUACGUUCUUAACUGGACUUGAGUGGCGUGUCCUCUUAGCCGGACUAACA-GCUUAACAAUGCC ....((((((((((((((...(((.......)))((((......))))....)))))..((((........)))).....-.))).)))))).. ( -24.70) >DroPse_CAF1 82722 93 + 1 AUUCCAUUGUGUGGCCACAUUGUGUUUUAAUUACGUCCUUAACUGGACCUGAGUGGCGUGUCCUCUUAGCCCGACUAACA-GUUGAACAAUGCU ....((((((...(((((...(((.......)))((((......))))....)))))..............((((.....-)))).)))))).. ( -23.10) >DroSim_CAF1 80900 93 + 1 AUUCCAUUGUGUAGCCACAUUGUGUCUUAAUUACGUUCUUAACUGGACUUGAGUGGCGUGUCCUCUUAGCCGGACUAACA-GCUUAACAAUGCC ....((((((...(((((...(((.......)))((((......))))....)))))..((((........)))).....-.....)))))).. ( -23.30) >DroEre_CAF1 83306 93 + 1 AUUCCAUUGUGUGGCCACAUUGUGUCUUAAUUACGUUCUUAACUGGACUUGAGUGGCGUGUCCUCUUAGUCGGACUAACA-GCUUAACAAUGCC ....((((((...(((((...(((.......)))((((......))))....)))))..((((........)))).....-.....)))))).. ( -23.10) >DroAna_CAF1 83257 94 + 1 AUUCCAUUGUGUGGCCACAUUGUGUCUUAAUUACGUUCUUAACUAGACUUGAGUGGCGUGUCCUGUUAGCCGGACUAACGGGCUUAACAAUGCC ....((((((...(((((.(((.((((...(((......)))..)))).))))))))..(.((((((((.....)))))))))...)))))).. ( -26.20) >DroPer_CAF1 83927 93 + 1 AUUCCAUUGUGUGGCCACAUUGUGUUUUAAUUACGUCCUUAACUGGACCUGAGUGGCGUGUCCUCUUAGCCCGACUAACA-GUUGAACAAUGCU ....((((((...(((((...(((.......)))((((......))))....)))))..............((((.....-)))).)))))).. ( -23.10) >consensus AUUCCAUUGUGUGGCCACAUUGUGUCUUAAUUACGUUCUUAACUGGACUUGAGUGGCGUGUCCUCUUAGCCGGACUAACA_GCUUAACAAUGCC ....((((((...(((((...(((.......)))((((......))))....)))))..((((........))))...........)))))).. (-21.54 = -21.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:40 2006