Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,955,412 – 8,955,502 |
Length | 90 |
Max. P | 0.935143 |
Location | 8,955,412 – 8,955,502 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 74.77 |
Mean single sequence MFE | -26.78 |
Consensus MFE | -16.78 |
Energy contribution | -16.87 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.15 |
Mean z-score | -1.77 |
Structure conservation index | 0.63 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8955412 90 - 27905053 ---CUGUCGAUUAUGGCGGAAGCCAUAAAAGGUGCAAAAAUACCGCUUCGUAAGCUGUUUAGGGCCAGAGACAAAGGCUCCCAGC-------CAGCAGCA ---....((((((((((....)))))))..((((......))))...)))...(((((....(((..(((.......)))...))-------).))))). ( -30.00) >DroPse_CAF1 82128 88 - 1 ---AUGUCGAUUAUGGCAGAAGCCGUAAAAGGUGCAAAAAUGCCGCCUCGUAAGCUGUUUAGGGCCAGAGACAAAGGAAUCGGGCC-------GG--GCU ---.......(((((((....)))))))..(((........)))(((((....)........((((.((..(....)..)).))))-------))--)). ( -24.30) >DroEre_CAF1 82796 94 - 1 ---CUGUCGAUUAUGGCGGAAGCCAUAAAAGGUGCAAAAAUACCGCUUCGUAAGCUGUUUAGGGCCAGAGACAAAGGCUCCCAGUCCGCAGGAGG-AG-- ---.......(((((((....)))))))..((((......)))).((((((..((((....(((((.........))))).))))..)).)))).-..-- ( -29.40) >DroMoj_CAF1 102112 84 - 1 CUGUUGUCGAUUAUGGCAAAUGCCAUAAAAGGUGCAAAAAUGCCA-UUCGUAAGCUGCGAAAGG---AAGAAAAAAGUAGA-GGCUA--AG--------- .....(((..(((((((....)))))))..............((.-(((((.....))))).))---..............-)))..--..--------- ( -18.00) >DroAna_CAF1 82696 95 - 1 ---CGCUCGAUUAUGGCGGAAGCCAUAAAAGGUGCAAAAACGCCGCCUCGUAAGCUGUUUAGGGCCAGAGACAAAGGCACUGAGG-AGCAGCA-AUAUAA ---.(((((((((((((....)))))))..((((......))))...)))...(((.(((((.(((.........))).))))).-)))))).-...... ( -35.20) >DroPer_CAF1 83348 88 - 1 ---AUGUCGAUUAUGGCAGAAGCCGUAAAAGGUGCAAAAAUGCCGCCUCGUAAGCUGUUUAGGGCCAGAGACAAAGGAACCGCGCC-------GG--GCC ---..(((..(((((((....)))))))..(((((.........(.(((....(((......)))..))).)...(....))))))-------.)--)). ( -23.80) >consensus ___CUGUCGAUUAUGGCAGAAGCCAUAAAAGGUGCAAAAAUGCCGCCUCGUAAGCUGUUUAGGGCCAGAGACAAAGGCACCGAGCC_______GG__GC_ ....(((((((((((((....)))))))..((((......))))...))....(((......)))....))))........................... (-16.78 = -16.87 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:39 2006