Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,943,913 – 8,944,012 |
Length | 99 |
Max. P | 0.716699 |
Location | 8,943,913 – 8,944,012 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 67.82 |
Mean single sequence MFE | -29.06 |
Consensus MFE | -8.35 |
Energy contribution | -11.16 |
Covariance contribution | 2.81 |
Combinations/Pair | 1.46 |
Mean z-score | -1.97 |
Structure conservation index | 0.29 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.716699 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8943913 99 + 27905053 UUCUA----UAGGUACAUAUA----UGUAUGUAUAUGUAUGUAGUGAACCGAGAGCUCUGGAUCUGGAUCUGGAUG------CGGAUGGUCCGGUGAUGACACUUACUCAAUU .....----((.(((((((((----(....)))))))))).))(((.((((.((.(((((.((((......)))).------)))).).)))))).....))).......... ( -29.60) >DroSec_CAF1 65523 101 + 1 UUCUA----UAGGUACAUACA----UAUAUGUAUAU----GUAGUGAACUGAGAGUUCUGGAUCUGGAUCUGGAUGCGGAUGCGGAUGGUCCGGUGAUGACACUUACUCAAUU ..(((----((.(((((((..----..))))))).)----))))(((..((((.((((((((((((.(((((....))))).))))...)))))....))).)))).)))... ( -28.10) >DroSim_CAF1 66934 101 + 1 UUCUA----UAGGUACAUACA----UAUAUGUAUAU----GUAGUGAACCGAGAGUUCUGGAUCUGGAUCUGGAUGCGGAUGCGGAUGGUCCGGUGAUGACACUUACUCAAUU .....----..(((.((((((----(((....))))----)).))).)))..((((...(((((((.(((((....))))).))))...)))((((....)))).)))).... ( -28.20) >DroYak_CAF1 72233 99 + 1 UCCUA----UAUG------UACGAAAACAUGUACAU----GUAGUGAACCGAGAGUUUUGGAGCUGGAUCUGGAUGCGGAUGCGGAUGGUCCGGUGAUGACACUUACUCAAUU (((((----((((------((((......)))))))----)))).))...((((((.(((..((((((((....(((....)))...))))))))..))).)))..))).... ( -32.30) >DroMoj_CAF1 88144 91 + 1 GCAUAUAUAUAUACGAGUCUG----UGUGUGUGUGUGUGUGU--------------AAAGGA---UGGCAAGGAUAC-CAUUCAGCAAGUCCGGCUAGCAUACUUACUCAAUU (((((((((((((((....))----)))))))))))))(.((--------------((.(((---(((........)-))))).((.((.....)).))....)))).).... ( -27.10) >consensus UUCUA____UAGGUACAUAUA____UAUAUGUAUAU____GUAGUGAACCGAGAGUUCUGGAUCUGGAUCUGGAUGCGGAUGCGGAUGGUCCGGUGAUGACACUUACUCAAUU ............((((((((......))))))))..................((((..((...(((((((....(((....)))...)))))))......))...)))).... ( -8.35 = -11.16 + 2.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:32 2006