Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,943,693 – 8,943,872 |
Length | 179 |
Max. P | 0.894014 |
Location | 8,943,693 – 8,943,808 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 72.60 |
Mean single sequence MFE | -19.98 |
Consensus MFE | -6.18 |
Energy contribution | -6.86 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.17 |
Mean z-score | -1.96 |
Structure conservation index | 0.31 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8943693 115 - 27905053 AAUAUACUGCUAAAAGGGGGUAGGAAUCUUACACCAAAAGAAAAUGGUAAUAAUCCCAUCUUUAGCAAAAACUUAGCAGAAGCGAUCGAAAAUAGUCGAAUGAUAGAAUCAACUA .......(((((((..((((((((...)))))((((........))))......)))...)))))))........((....))..((((......))))................ ( -21.50) >DroSec_CAF1 65324 94 - 1 AAUAUACUGCUAAAAGGGGAUAGGAAUCUUACACCCAAAGAAAUUGGUAAUAAUUCCAUCUUUU-------CUUAGCAUAAGCGAUUGAAAAUAGUCGAA--------------A .......((((((.(((((((.(((((.......((((.....)))).....))))))))))))-------.))))))....((((((....))))))..--------------. ( -21.40) >DroSim_CAF1 66721 108 - 1 AAUAUACUGCUAAAAGGGGAUAGGAAUCUUACACCCAAAGAAAUUGGUAACAAUCCAAUCUUUU-------UUUAGCAAAAGCGAUCAAAAAUAGUCGAGUGAUAGAAACAACUA ....(((((((((((((((((.(((.(.((((.....((....)).)))).).))).)))))))-------)))))).....((((........))))))))............. ( -23.90) >DroEre_CAF1 71146 106 - 1 AAUAUACUGCUAAAAGGGGGUAGGAGUCUUACACCCAAAGAAAUUGCUAUUAACCCCGACUCUU-------CUUAGCAAAAGUGAUGAAAAAUCAACGAG--AUAGAAUCAGCUA ........(((....((((((((.(.((((.......))))...).))))...))))((.((((-------(((.((....))(((.....)))...)))--).))).))))).. ( -19.40) >DroYak_CAF1 72040 88 - 1 AAUAUACUGCUAAAAGGGGGUAGGAAUCUUACACCCAAAGAAAACACUAUUAU-------------------------GAAGCGAUAAAAUUUCGACGGA--AUAGACUCAACUA ...............(((.(((((...))))).)))..........(((((.(-------------------------(...(((.......))).)).)--))))......... ( -13.70) >consensus AAUAUACUGCUAAAAGGGGGUAGGAAUCUUACACCCAAAGAAAUUGGUAAUAAUCCCAUCUUUU_______CUUAGCAAAAGCGAUCAAAAAUAGUCGAA__AUAGAAUCAACUA ...............(((.(((((...))))).)))..............................................((((........))))................. ( -6.18 = -6.86 + 0.68)
Location | 8,943,773 – 8,943,872 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 79.29 |
Mean single sequence MFE | -29.95 |
Consensus MFE | -22.06 |
Energy contribution | -22.83 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.20 |
Mean z-score | -1.68 |
Structure conservation index | 0.74 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8943773 99 - 27905053 AUCGCACUCCUUGUGGCAGUGGAUUUAGAAAACGGGGACAGCAGACAC-GACACGUCAACUUGCAAAUAUACUGCUAAAAGGGGG-----UAGGAAUCUUACACC ......((((((.((((((((.((((.......(....).((((((..-.....)))....))))))).)))))))).))))))(-----((((...)))))... ( -28.50) >DroPse_CAF1 70537 97 - 1 GGCGCACUCG-CAUGGCAGUGGAUUUGGAAAAUGGGGACAGCAGAC------ACGUCAACUUGCAAAUAUACUGCUGCGAGGAGGAGAGGGAGGAGCC-UGCGCC (((((.((((-((..((((((.(((((.((..((....))...((.------...))...)).))))).))))))))))))......(((......))-)))))) ( -37.00) >DroSim_CAF1 66794 99 - 1 AUCGCACUCCUUGUGGCAGUGGAUUUGGAAAACGGGGACACCAGACAC-GACACGUCAACUUGCAAAUAUACUGCUAAAAGGGGA-----UAGGAAUCUUACACC ......((((((.((((((((.(((((.((...((.....)).(((..-.....)))...)).))))).)))))))).)))))).-----............... ( -28.90) >DroEre_CAF1 71217 99 - 1 AUCGCACUCCUUGUGGCAGUGGAUUUGGAAAACGGGGACAGCAGACAC-GACACGUCAACUUGCAAAUAUACUGCUAAAAGGGGG-----UAGGAGUCUUACACC ......((((((.((((((((.(((((.((...(....)....(((..-.....)))...)).))))).)))))))).))))))(-----((((...)))))... ( -31.00) >DroAna_CAF1 71881 91 - 1 AUCGCACUCUUUGGUCCACUGGAUUUGGAAAACGGGGACAGCAGACACCGACACGUCAAGUUGCAAAUAUACUGCCAAGAGGUGA-----AA---------CACU .((((.(((((.(((((.(((...........))))))).((((....((((.......))))........))))))))))))))-----..---------.... ( -22.00) >DroPer_CAF1 72178 97 - 1 GGCGCACUCG-CAUGGCAGUGGAUUUGGAAAAUGGGGACAGCAGAC------ACGUCAACUUGCAAAUAUACUGCUGAGAGGAGGAGAGGGAGGAGCC-UGCGCC (((((.(((.-(.((((((((.(((((.((..((....))...((.------...))...)).))))).)))))))).)..)))...(((......))-)))))) ( -32.30) >consensus AUCGCACUCCUUGUGGCAGUGGAUUUGGAAAACGGGGACAGCAGACAC_GACACGUCAACUUGCAAAUAUACUGCUAAAAGGGGG_____UAGGAGUC_UACACC ......((((((.((((((((.(((((.((...(....)....(((........)))...)).))))).)))))))).))))))..................... (-22.06 = -22.83 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:31 2006