Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,938,593 – 8,938,692 |
Length | 99 |
Max. P | 0.980299 |
Location | 8,938,593 – 8,938,692 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.77 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -27.52 |
Energy contribution | -28.88 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.09 |
Mean z-score | -2.05 |
Structure conservation index | 0.90 |
SVM decision value | 1.86 |
SVM RNA-class probability | 0.980299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8938593 99 - 27905053 UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCGCCCAGCCAAUAAAUUGACUGACUUGCCCAUGGCCACGCCCCCA .........(((((((((...(((((((((((((.(((....)))...))))))))))(((.(((....))).)))...))).)))))))))....... ( -34.80) >DroPse_CAF1 64495 95 - 1 UGCUUAUUUGU--UCGUGUUCGUAGGCGAUAGUGCAACUUAUGCUUUUCGCUGUCGCCCAGCCAAUAAAUUCACUGACACACUC--UGCAACUCUCUCU (((.....(((--(.(((....((((((((((((.((........)).)))))))))).......))....))).)))).....--.)))......... ( -20.81) >DroSec_CAF1 60083 99 - 1 UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCGCCCAGCCAAUAAAUUGACUGACAUGCCCAUGGCCACGCCCCCA .........(((((((((..(((.((((((((((.(((....)))...))))))))))(((.(((....))).))))))....)))))))))....... ( -35.40) >DroSim_CAF1 61490 99 - 1 UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCGCCCAGCCAAUAAAUUGACUGACAUGCCCAUGGCCACGCCCCCA .........(((((((((..(((.((((((((((.(((....)))...))))))))))(((.(((....))).))))))....)))))))))....... ( -35.40) >DroEre_CAF1 66769 98 - 1 UGCUUAUUUGUGGCCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCCUCCAGCCAAUAAAUUGACUGACAUGCCCCUGGCCACGCCCGC- .........(((((((.((.(((.((.(((((((.(((....)))...))))))))).(((.(((....))).)))))).))...)))))))......- ( -27.90) >DroYak_CAF1 66752 98 - 1 UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCCUCCAGCCAAUAAAUUGACUGACAUGCCCAUGGCCACGCCCGC- .........(((((((((......((((((((((.(((....)))...)))))))...(((.(((....))).)))....))))))))))))......- ( -28.50) >consensus UGCUUAUUUGUGGUCGUGCUUGUAGGCGAUAGUGCAACUUAUGUUUCCCGCUGUCGCCCAGCCAAUAAAUUGACUGACAUGCCCAUGGCCACGCCCCCA .........((((((((((.(((.((((((((((.(((....)))...))))))))))(((.(((....))).)))))).))..))))))))....... (-27.52 = -28.88 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:29 2006