Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,928,790 – 8,928,887 |
Length | 97 |
Max. P | 0.702273 |
Location | 8,928,790 – 8,928,887 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -20.34 |
Consensus MFE | -11.64 |
Energy contribution | -11.86 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.25 |
Mean z-score | -1.87 |
Structure conservation index | 0.57 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.702273 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8928790 97 + 27905053 GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGCGCGAAGACAAUCU-CCAUCUUCUUGUUCCCCGAUCCCCUGUCCCCAA----------CCC (((((((.........................))))))).((.((((((.(((((......-...))))).))....)))).))...........----------... ( -18.91) >DroSec_CAF1 50411 97 + 1 GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGCGGGAAGACAAUCC-CCAUCUUCCUGUUCUCCGAUCCCCUAUCCCCAA----------CCC (((((((.........................))))))).((.((((((((((((......-...))))))))....)))).))...........----------... ( -25.41) >DroSim_CAF1 51737 97 + 1 GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGCGCGAAGACAAUCC-CCAUCUUCCUGUUCUCCGAUCCCCUAUCCCCAA----------CCC (((((((.........................))))))).((.((((((.(((((......-...))))).))....)))).))...........----------... ( -18.91) >DroEre_CAF1 56876 84 + 1 GGGCGCAAUUACAUUCUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGUGCGAAGGCAAUCC-CCAUCUUCCUGUUCCCGAUUCCC----------------------- (((((((.........................))))))).((.(((((((....)))....-.((......))...))))..)).----------------------- ( -17.51) >DroYak_CAF1 57051 97 + 1 GGGCGCAAUUACAUUUUAUCAUUUAUUCACCAUGCGCUCAGGCUCGGCGCGAAGGCGAUUC-CCAUCUUCCUGUUCCCGAUUCCCCAACCGCUGA----------ACC (((((((.........................))))))).((.((((((.(..((.((.((-....(.....).....)).)).))..)))))))----------.)) ( -23.11) >DroAna_CAF1 55921 103 + 1 GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCCCAGACCCGACGCGAAGACAAUCUUCCAUCGCCAAAGCCCCCCA-----UACCCCCAACAACAUUAAACCC (((((((.........................))))))).....(((.(.((((.....))))).))).............-----...................... ( -18.21) >consensus GGGCGCAAUUACAUUUUAUCAUUUAUUCAACAUGCGCUCAGGCUCGGCGCGAAGACAAUCC_CCAUCUUCCUGUUCCCCGAUCCCCUAUCCCCAA__________CCC (((((((.........................)))))))......((((.(((((..........))))).))))................................. (-11.64 = -11.86 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:26 2006