Locus 3324

Sequence ID 3R_DroMel_CAF1
Location 8,926,252 – 8,926,342
Length 90
Max. P 0.773368
window5358

overview

Window 8

Location 8,926,252 – 8,926,342
Length 90
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 76.24
Mean single sequence MFE -18.99
Consensus MFE -12.30
Energy contribution -13.54
Covariance contribution 1.24
Combinations/Pair 1.06
Mean z-score -1.66
Structure conservation index 0.65
SVM decision value 0.54
SVM RNA-class probability 0.773368
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8926252 90 - 27905053
UAUAAACAAACCACAUUCACUGAACUCUCUUCGGGGAUAGUGUUGUCCACUCAAGGACAGCUACAAAGGGCCAA---AAAAC-UGUAACUUU----------UA
..........((......((((...((((....))))))))(((((((......)))))))......)).....---.....-.........----------.. ( -19.60)
>DroSec_CAF1 47926 91 - 1
UAUAAGCAAACCACAUUCACUGAACUCUAUUUGGGGAUAGUGAUGUCCACUCAAGGACAGCUAAAAAUGGCCAA---AAAAC-UGUAACUUU---------CUA
....(((.........((((((..(((.....)))..))))))(((((......))))))))............---.....-.........---------... ( -20.00)
>DroSim_CAF1 49232 91 - 1
UAUAAGCAAACCACAUUCACUGAACUCUAUUCGGGGAUAGUGAUGUCCACUCAAGGACAGCUAAAAAUGGGCAA---AAAAC-UGUAACUUU---------CUA
....(((.........((((((..(((.....)))..))))))(((((......))))))))....((((....---....)-)))......---------... ( -19.90)
>DroEre_CAF1 54269 100 - 1
UACUAGCAGAC-ACAUUCACUGAACUCUAUUCAGGGAUAGUGUUGUCCACUGAAGGGCAGCUUUAU-UCUCAAAUUACUAACUUGUA--UAUAAAAAAUAGAUA
.....((.(((-((((((.(((((.....))))))))).)))))((((......)))).))(((((-(.......(((......)))--.......)))))).. ( -21.14)
>DroYak_CAF1 54566 91 - 1
CACCAGCAAGU-CCAUUCACUUAACUCUAUUCUGGGAUAGUGAUGUCCACUGAGGAACAGCUUUUUAUGGCAAAAAAAAAAC-UGUA--UGU---------CUA
.........(.-.(((.((((...(((......)))..)))))))..)...((.(.((((.(((((.........))))).)-))).--).)---------).. ( -14.30)
>consensus
UAUAAGCAAACCACAUUCACUGAACUCUAUUCGGGGAUAGUGAUGUCCACUCAAGGACAGCUAAAAAUGGCCAA___AAAAC_UGUAACUUU_________CUA
....(((.........((((((..(((.....)))..))))))(((((......)))))))).......................................... (-12.30 = -13.54 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:25 2006