Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,924,826 – 8,924,930 |
Length | 104 |
Max. P | 0.998658 |
Location | 8,924,826 – 8,924,930 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 93.46 |
Mean single sequence MFE | -39.70 |
Consensus MFE | -35.18 |
Energy contribution | -36.06 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.06 |
Mean z-score | -2.27 |
Structure conservation index | 0.89 |
SVM decision value | 3.18 |
SVM RNA-class probability | 0.998658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8924826 104 - 27905053 GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAAGAGCCAGGCACCCAGUUUAAUCCAAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA ((.(((((((((..(((((((....)))))))...))))))))).))...........((((((......(.(.(((((....)))))))......))).))). ( -40.90) >DroSec_CAF1 46473 104 - 1 GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAAGAGCCAGGCACCCAGCUUAAUCCAAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA ((.(((((((((..(((((((....)))))))...))))))))).))..((((......))))....(((....)))....((((((.(......).)))))). ( -42.80) >DroSim_CAF1 47781 104 - 1 GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAAGAGCCAGGCACCCAGCUUAAUCCAAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA ((.(((((((((..(((((((....)))))))...))))))))).))..((((......))))....(((....)))....((((((.(......).)))))). ( -42.80) >DroEre_CAF1 52760 103 - 1 GGAGCUGGGCUUGAGUACUGGGAGCCCAGUGCCAAGAACCGGGUACCCAACUUAAUCCAUGGCAAUCGUCGAGCGGCACUCU-UAGCCCCCAAAAGUGCACUUA ((.((((((.((((((..((((.((((.((.......)).)))).))))))))))))).((((....)))))))(((.....-..))).))............. ( -32.30) >DroYak_CAF1 53108 104 - 1 GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAGGAGGCAGGCACCCAGCUUAAUCCGAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA ((.((((((((((((..(((((.(((...((((....))))))).))))))))))...((.....)))))))))(((((....))))).))............. ( -39.70) >consensus GGAGCUUGGCUUGAGUACUGGGAGCCCAGUGCCAAGAGCCAGGCACCCAGCUUAAUCCAAGGCAAUCGUCGAGCGGCAUAAGAGUGCCCCCAAAAGUGCACUUA ((.(((((((((..(((((((....)))))))...))))))))).))...........((((((......(.(.(((((....)))))))......))).))). (-35.18 = -36.06 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:24 2006