Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,923,442 – 8,923,541 |
Length | 99 |
Max. P | 0.746770 |
Location | 8,923,442 – 8,923,541 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 89.64 |
Mean single sequence MFE | -21.42 |
Consensus MFE | -16.52 |
Energy contribution | -16.52 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.08 |
Mean z-score | -1.74 |
Structure conservation index | 0.77 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8923442 99 + 27905053 AGUACACGUACACAGCAUUGAUACAGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGGAAUUUGCAAAAGUACAAGGAUCCC--CUAUAAGGCACAAAUUU .((....((((.((((((((((......)))))).)))).....(((((((........)))))))...)))).(((....)--)).....))........ ( -23.80) >DroSec_CAF1 45098 100 + 1 AGUACACGUACACAGCAUUGAUACAGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGAAAUUUGCAAA-GGACAAGGAUCGCCUCUAUAAGGCACAAAUAU .(((....))).((((((((((......)))))).))))..((((((((((........))))))...-)))).......((((.....))))........ ( -25.70) >DroSim_CAF1 46381 101 + 1 AGUACACGUACACAGCAUUGAUACAGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGGAAUUUGCAAAAGUACAAGGAUCCCCUCUAUAAGGCACAAAUUU .((....((((.((((((((((......)))))).)))).....(((((((........)))))))...)))).(((....))).......))........ ( -23.20) >DroEre_CAF1 51359 99 + 1 AGUACACGUACAAAGCAUUGAUACCGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGGAAUUUGCAAAAACACAAGACUCAC--UUAUAAGGCACCUAUUC .(((....)))..(((((((((......)))))).)))...((((((((((........))))))........(((.....)--))...))))........ ( -16.80) >DroYak_CAF1 51648 99 + 1 AGUACACGUACAAAGCAUUGAUACCGAAAUCAAUCGCUGAAGUCUGCGAAUGCUCAGGAAUUUGCAAAAACACACGGCUCAC--UUAUAAGGCAACUAUUC ......(((....(((((((((......)))))).)))......(((((((........))))))).......)))......--.....((....)).... ( -17.60) >consensus AGUACACGUACACAGCAUUGAUACAGAAAUCAAUCGCUGAAGUCUGCGAAUGAUCAGGAAUUUGCAAAAGCACAAGGAUCAC__CUAUAAGGCACAAAUUU .(((....))).((((((((((......)))))).))))..((((((((((........))))))..........((.......))...))))........ (-16.52 = -16.52 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:23 2006