Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,920,188 – 8,920,281 |
Length | 93 |
Max. P | 0.500000 |
Location | 8,920,188 – 8,920,281 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 74.66 |
Mean single sequence MFE | -25.16 |
Consensus MFE | -11.31 |
Energy contribution | -13.42 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.25 |
Mean z-score | -1.80 |
Structure conservation index | 0.45 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8920188 93 - 27905053 UGCUCCAUCAAUUUAUGGGCGCCUAAAGAUUUGGCCAACCAACCGACUAUGUGGCUAAGCAUCUUGUCCCAUAAACCAGGCCAAGCAAUGGAC ...(((((...((((((((.((...((((((((((((..((........)))))))))..)))))))))))))))....((...)).))))). ( -22.40) >DroSec_CAF1 41850 83 - 1 UGCUCCAUCAAUUUAUGGGCGCCUAAAGAUUUGGCCAACCAACCGACUAUGUGGCUAAAC----------AUAAACCAGGCCAAGCACUGGCC .((.((((......))))))(((....(.(((((((...(....)..(((((......))----------))).....))))))))...))). ( -21.50) >DroEre_CAF1 48063 87 - 1 UGCUCCAUCAAUUUAUGGGCGCCUAAAGAUUUGGCCAACCGAC------UGGGGCUAAGCAUCUUGUCCCAUAAACCAGGCCGGGCACUGGCC .((.((((......))))))(((....(.(((((((.......------((((((.(((...))))))))).......))))))))...))). ( -27.34) >DroYak_CAF1 48315 89 - 1 UGCUCCAUCAAUUUAUGGGCGCCUGAAGAUUUGGCCAACCAAC----UCUGGGGCUAAGCGUCUUGUCCCAUAAACCAGGCCAAGCACUGGCC ...........((((((((.((..((.(.(((((((..(((..----..))))))))))).))..))))))))))...(((((.....))))) ( -28.90) >DroAna_CAF1 48108 88 - 1 UGCUCUAUCAAUUUAUGGGCGCCAGAAGAUUUGCUC--CC-GGCGUCCAC-AGGGUGAACAUCUUG-CCCAUAAACCAGGCCAACUAAGGCCU ...............((((((((.(.((.....)).--).-)))))))).-.(((..(.....)..-))).......(((((......))))) ( -30.40) >DroPer_CAF1 47168 74 - 1 UGCUCUAUCAAUUUAUGGGCGCCCAAAGAUUUGGUCCACC-----------------AGCAUCUUGG-CCAUAAACCAGGCAGAGUCA-AGCC .(((((..(..(((((((....((((.(((((((....))-----------------)).)))))))-)))))))...)..)))))..-.... ( -20.40) >consensus UGCUCCAUCAAUUUAUGGGCGCCUAAAGAUUUGGCCAACCAAC____UAUGGGGCUAAGCAUCUUGUCCCAUAAACCAGGCCAAGCAAUGGCC ...........((((((((......(((((((((((................)))))))..))))..))))))))...(((((.....))))) (-11.31 = -13.42 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:20 2006