Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,262,353 – 1,262,449 |
Length | 96 |
Max. P | 0.512037 |
Location | 1,262,353 – 1,262,449 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.06 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -16.12 |
Energy contribution | -16.28 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.59 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1262353 96 + 27905053 AAUUGGCGCCC------------UCUGC--A----------AAAGCGAGAGCCAGAAAUCAACUUCCGUUGUGCAGCGGAAGUGAAAUGUGAAAUUUGAAAUUUAUUAUUGGCAAUGCAA .....(((..(------------((.((--.----------...))))).(((((...(((.((((((((....)))))))))))...(((((........)))))..)))))..))).. ( -25.70) >DroPse_CAF1 40836 106 + 1 AAAAUGAGCCC------------CCGGG--AGGCCGGUGGCAGCGCAAGACCCAGAAAUCAACUUCCGUUGUGCAGCGGAAGUGAAAUGUGAAAUUUGAAAUUUAUUAUUGGCAGUGCAA .......(((.------------((((.--...)))).))).((((.....((((...(((.((((((((....)))))))))))...(((((........)))))..))))..)))).. ( -32.80) >DroEre_CAF1 37438 96 + 1 AAUUGGCGCCC------------UUGGC--A----------AAAGCGAGAGCCAGAAAUCAACUUCCGUUAUGUAGCGGAAGUGAAAUGUGAAAUUUGAAAUUUAUUAUUGGCAAUGCAA .....(((((.------------..)))--.----------.........(((((...(((.((((((((....)))))))))))...(((((........)))))..)))))...)).. ( -24.20) >DroYak_CAF1 51792 96 + 1 ACUUUGCGCCC------------UUGGC--A----------AAAGGGAGGCCCUUAAAUCAACUUCCCUUGCGCAGCGGAAGUGAAAUGUGAAAUUUAAAAUUUAUUAUUGGCAAUGAAA .(.(((((((.------------..)))--.----------.((((((((............)))))))).((((((....))....))))....................)))).)... ( -21.00) >DroAna_CAF1 38252 110 + 1 AAUAUGGGCCCAGGAGGUCGGCCUUCGGAGA----------AAAACGAGAGCCAGAAAUCAACUUCCGUUGUGCAGCGGAAGUGAAAUGUGAAAUUUGAAAUUUAUUAUUGGCAAUGCAA .......(((...((..(((((.((((....----------....)))).))).))..)).(((((((((....)))))))))...........................)))....... ( -29.70) >DroPer_CAF1 40843 106 + 1 AAAAUGAGCCC------------UCGGG--AGGCCGGUGGCAGCGCAAGACCCAGAAAUCAACUUCCGUUGUGCAGCGGAAGUGAAAUGUGAAAUUUGAAAUUUAUUAUUGGCAGUGCAA .......(((.------------((((.--...)))).))).((((.....((((...(((.((((((((....)))))))))))...(((((........)))))..))))..)))).. ( -30.40) >consensus AAUAUGCGCCC____________UCGGC__A__________AAAGCGAGACCCAGAAAUCAACUUCCGUUGUGCAGCGGAAGUGAAAUGUGAAAUUUGAAAUUUAUUAUUGGCAAUGCAA .......(((................................................(((.((((((((....)))))))))))...(((((........)))))....)))....... (-16.12 = -16.28 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:37 2006