Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,914,282 – 8,914,391 |
Length | 109 |
Max. P | 0.948519 |
Location | 8,914,282 – 8,914,391 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 87.43 |
Mean single sequence MFE | -36.90 |
Consensus MFE | -28.68 |
Energy contribution | -28.60 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.08 |
Mean z-score | -2.27 |
Structure conservation index | 0.78 |
SVM decision value | 1.38 |
SVM RNA-class probability | 0.948519 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8914282 109 + 27905053 GUUUCCAAUUAAAAGGUGUGCGCCACUGCUACUUCCCAGUGGAGUUCUAAACCACAAAGCGAUCGAUCAGCUGCUCUGCACAGCUGAUUUAUUUCGCGCGCUUUUCAUG ...........(((((((((((((((((........))))))..................(((.(((((((((.......))))))))).))).))))))))))).... ( -34.50) >DroSec_CAF1 35940 109 + 1 GUUUCCAAUUAAAAGGUGUGCGCCACCGCUACUGCCCAGUGGAGUUCUAAACCACGAAGCGAUCGAUCAGCUGCACUGCGCAGCUGUUUUAGUUCGCGCGCUUUUCCUG ...........((((((((((.((((.((....))...)))).(..(((((...(((.....)))..(((((((.....))))))).)))))..))))))))))).... ( -35.10) >DroSim_CAF1 36067 109 + 1 GUUUCCAAUUAAAAGGUGUACGCCACCGCUACUUACCAGUGGAGUUCUAAACCACGAAGCGAUCGAUCAGCUGCUCUGCGCAGCUGAUUUAGUUCGCGCGCUUUUCAUG ...........((((((((......(((((.......)))))................((((..((((((((((.....))))))))))....)))))))))))).... ( -34.20) >DroEre_CAF1 36902 109 + 1 GUCUGCCAUCAAAAGGUGUGUGCCACUGCUACUGCCUAGCGGAGUUUCACACCACUGAACGAUCGAUCAGCUGCUCAGCACAGCUGAUUAAGUUCGGGCGCUUUUCAUG ....(((.......((((((.((..((((((.....)))))).))..))))))..(((((....(((((((((.......)))))))))..)))))))).......... ( -39.10) >DroYak_CAF1 42130 109 + 1 GUUUGCCAUCGAAAGGUGUGCGCCUCCGCUACUACCCAGCGGAGUUCUAAACCACUAAGCGAUCGAUCAGCUGCUCAGCACAGCUGAUUCAGUUCGCGCGCUUUUCAGG ......((((....)))).(((((((((((.......)))))))..............((((..(((((((((.......)))))))))....))))))))........ ( -41.60) >consensus GUUUCCAAUUAAAAGGUGUGCGCCACCGCUACUGCCCAGUGGAGUUCUAAACCACGAAGCGAUCGAUCAGCUGCUCUGCACAGCUGAUUUAGUUCGCGCGCUUUUCAUG ...........((((((((......(((((.......)))))................((((..(((((((((.......)))))))))....)))))))))))).... (-28.68 = -28.60 + -0.08)
Location | 8,914,282 – 8,914,391 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 87.43 |
Mean single sequence MFE | -36.62 |
Consensus MFE | -27.30 |
Energy contribution | -27.26 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.14 |
Mean z-score | -1.63 |
Structure conservation index | 0.75 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8914282 109 - 27905053 CAUGAAAAGCGCGCGAAAUAAAUCAGCUGUGCAGAGCAGCUGAUCGAUCGCUUUGUGGUUUAGAACUCCACUGGGAAGUAGCAGUGGCGCACACCUUUUAAUUGGAAAC ........((((((((.....(((((((((.....)))))))))...)))).................(((((........)))))))))...((........)).... ( -33.40) >DroSec_CAF1 35940 109 - 1 CAGGAAAAGCGCGCGAACUAAAACAGCUGCGCAGUGCAGCUGAUCGAUCGCUUCGUGGUUUAGAACUCCACUGGGCAGUAGCGGUGGCGCACACCUUUUAAUUGGAAAC ........(.((((.........(((((((.....)))))))((((..((((..((((.........))))..))).)...)))).)))).).((........)).... ( -34.10) >DroSim_CAF1 36067 109 - 1 CAUGAAAAGCGCGCGAACUAAAUCAGCUGCGCAGAGCAGCUGAUCGAUCGCUUCGUGGUUUAGAACUCCACUGGUAAGUAGCGGUGGCGUACACCUUUUAAUUGGAAAC (((((..((((..(((......((((((((.....)))))))))))..))))))))).....(.((.((((((.(....).)))))).)).).((........)).... ( -36.70) >DroEre_CAF1 36902 109 - 1 CAUGAAAAGCGCCCGAACUUAAUCAGCUGUGCUGAGCAGCUGAUCGAUCGUUCAGUGGUGUGAAACUCCGCUAGGCAGUAGCAGUGGCACACACCUUUUGAUGGCAGAC (((.((((((((..(((((..(((((((((.....)))))))))..)..)))).)))(((((..(((..((((.....)))))))..)))))..))))).)))...... ( -38.20) >DroYak_CAF1 42130 109 - 1 CCUGAAAAGCGCGCGAACUGAAUCAGCUGUGCUGAGCAGCUGAUCGAUCGCUUAGUGGUUUAGAACUCCGCUGGGUAGUAGCGGAGGCGCACACCUUUCGAUGGCAAAC ........((((((((..(((.((((((((.....))))))))))).))))..............((((((((.....))))))))))))...((.......))..... ( -40.70) >consensus CAUGAAAAGCGCGCGAACUAAAUCAGCUGUGCAGAGCAGCUGAUCGAUCGCUUAGUGGUUUAGAACUCCACUGGGAAGUAGCGGUGGCGCACACCUUUUAAUUGGAAAC ........((((((((.....(((((((((.....)))))))))...))))...((((.........))))...............))))................... (-27.30 = -27.26 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:18 2006