Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,904,624 – 8,904,720 |
Length | 96 |
Max. P | 0.744724 |
Location | 8,904,624 – 8,904,720 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 75.81 |
Mean single sequence MFE | -28.02 |
Consensus MFE | -11.43 |
Energy contribution | -13.10 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.30 |
Mean z-score | -2.19 |
Structure conservation index | 0.41 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744724 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8904624 96 - 27905053 UAUUUCAUCCC-AGGCC-AGCAACU-UGGCCAGAA-GGGUUUGGUUCGGCUCGGCUUUACAUGUUUAUGCUGCACCAGCAGCAGCAUCCAUGGCCAAAAG ....(((.(((-.((((-((....)-)))))....-)))..)))........((((....((((...((((((....))))))))))....))))..... ( -30.80) >DroSec_CAF1 26361 96 - 1 UAUUUCAUCCC-AGGCC-AGCAACU-UGGCCAAAA-GGGUUUGGUUCGUCUCGGCUUUACAUGUUUAUGCUGCACCAGCAGCAUCAUCCAUGGCCAAAAG ........(((-.((((-((....)-)))))....-)))((((((..((....))....((((..((((((((....))))))).)..)))))))))).. ( -31.90) >DroSim_CAF1 26431 96 - 1 UAUUUCAUCCC-AGGCC-AGCAACU-UGGCCAGAA-GGGUUUGGUUCGUCUCGGCUUUACAUGUUUAUGCUGCACCAGCAGCAUCAUCCAUGGCCAAAAG ........(((-.((((-((....)-)))))....-)))((((((..((....))....((((..((((((((....))))))).)..)))))))))).. ( -31.90) >DroEre_CAF1 27199 76 - 1 UAUUUCAGGCC-AGGCC-AACAACU-UGGCCAGAA-GCGUUUGGUUCGCCUCGGCUUCACAUGUUUAUGCUGCACCAGCA-------------------- ......(((((-.((((-((....)-))))).((.-(((.......))).)))))))..........(((((...)))))-------------------- ( -24.60) >DroYak_CAF1 27651 93 - 1 UAUUUCAUCCC-AGACC-AACAACU-UGGCCAGAA-GCGUUUGGUUCGCCCCGGCUUCACAUGUUUAUGCUGCACCAGCAGCCACA---AUGGCCAAAAG ...........-.....-......(-(((((((((-((....((....))...)))))...(((....(((((....))))).)))---.)))))))... ( -27.20) >DroAna_CAF1 29062 96 - 1 C-CUUCAUCCUUCGGCCGACUAACUAUAGCUUCAAUAGCUUCAGUUAGACUCU-CGUUGCAUGUUUAUGUUGUAGGAGCAGCAACAUUUAAAGAA--AAA .-........(((......((((((..((((.....))))..)))))).....-.(((((.(((((.........)))))))))).......)))--... ( -21.70) >consensus UAUUUCAUCCC_AGGCC_AGCAACU_UGGCCAGAA_GGGUUUGGUUCGCCUCGGCUUUACAUGUUUAUGCUGCACCAGCAGCAACAUCCAUGGCCAAAAG ...........................(((((((.....)))))))......((((....(((....((((((....)))))).)))....))))..... (-11.43 = -13.10 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:16 2006