Locus 3316

Sequence ID 3R_DroMel_CAF1
Location 8,904,153 – 8,904,262
Length 109
Max. P 0.968318
window5347

overview

Window 7

Location 8,904,153 – 8,904,262
Length 109
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 75.27
Mean single sequence MFE -28.68
Consensus MFE -6.32
Energy contribution -6.24
Covariance contribution -0.08
Combinations/Pair 1.47
Mean z-score -2.19
Structure conservation index 0.22
SVM decision value 1.62
SVM RNA-class probability 0.968318
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8904153 109 - 27905053
UAUACAUUUUGUAAAGUACAUCAAGUUUUGUUCAAAACCACUAGAUGUCGCACCACUUUUAUACGUAUACGU---UACAAUACGUAUACGUAGAAUGUAAGCUGGUGGCAGA
.......(((((...(.(((((.((((((.....)))..))).)))))).((((((((...(((((((((((---......)))))))))))......))).)))))))))) ( -30.60)
>DroSec_CAF1 25866 112 - 1
UAUACAUUUGGUGAAGUACAUCAAGUUCUGUCCAUUACCACUAGAUGUCGCAUUACUGUUUUCAGAAUUCGUGUGUAAAAUGCAUAUGCGUAGAAUGUGAGCUAGUGGCAAA
.....((((((((.....))))))))...........(((((((...(((((((.(((....))).((.(((((((.....))))))).))..))))))).))))))).... ( -30.70)
>DroSim_CAF1 25934 111 - 1
UAUACAUUUGGUGAAGUACAUCAAGUUGUGUCCAUUACCACUAGAUGUCGCAUUACUAUGUUCAGAAUUCGUGUGUAAAAUACAUAGGCGUAGAAUGUGAGC-AGUGGCAGA
.((((((((((((.....))))))).)))))......(((((.(...(((((((.((((((..((....)((((.....)))).)..))))))))))))).)-))))).... ( -29.30)
>DroEre_CAF1 26810 110 - 1
--UACAUAUUGUAAGGCACACCAAGUUCUGUCCAUAGCCCAUAGAUGGCGCACAACUAUGUCCUUUAAUCGUAUUUAAGAUACAUCUACGUAGAAUAUGAGCUGGUGGCAGA
--.............((.(((((.((((........(((((....))).))....((((((......(((........)))......)))))).....)))))))))))... ( -25.60)
>DroYak_CAF1 27233 111 - 1
CUUACAUUUCCUACUGUACACCAAGUUGCG-CCACAACCAAUAGAUGGCGCACCACGAUGUCCUUAAAACGUCUGUAAGAUACAUACAUGUAGAAUAUUAACUGGUGGCAGA
.............((((.(((((.((((((-((((........).)))))).....(((((.......))))).......((((....)))).......)))))))))))). ( -27.20)
>consensus
UAUACAUUUGGUAAAGUACAUCAAGUUCUGUCCAUAACCACUAGAUGUCGCACCACUAUGUUCAGAAUUCGUGUGUAAAAUACAUAUACGUAGAAUGUGAGCUGGUGGCAGA
...............((.(((((.((((..........................................((((.....))))....((((...)))))))))))))))... ( -6.32 =  -6.24 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:15 2006