Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,898,345 – 8,898,435 |
Length | 90 |
Max. P | 0.530455 |
Location | 8,898,345 – 8,898,435 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 84.04 |
Mean single sequence MFE | -20.60 |
Consensus MFE | -16.72 |
Energy contribution | -17.80 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.48 |
Structure conservation index | 0.81 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530455 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8898345 90 + 27905053 -------UUACUAAAAAUGCUUUUUGGUUAUUUCGAUUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC -------..............((((((((((.((..........)).)))))))))).(((((((.(........)..(((....)))))))))).. ( -23.20) >DroSim_CAF1 20157 90 + 1 -------UUACUGAAAAUGCUUUUUGGUUAUUUCGAUUUUUACAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC -------..............((((((((((.((..........)).)))))))))).(((((((.(........)..(((....)))))))))).. ( -23.20) >DroEre_CAF1 20473 90 + 1 -------UUACUGAAUAUGCUUUUUGGUUAUUUCGACUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC -------..............((((((((((.((..(....)..)).)))))))))).(((((((.(........)..(((....)))))))))).. ( -24.30) >DroYak_CAF1 20787 90 + 1 -------UUACUGAACAUGCUGUUUCGUUAUUUCGGUUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC -------..............((((.(((((.((.((....)).)).)))))..))))(((((((.(........)..(((....)))))))))).. ( -19.20) >DroMoj_CAF1 25558 95 + 1 AAUCGAUAAACUA-AAU-CAUGUUCGGCAAUUUUCCUUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCUGCACGCAC ....(((......-.))-).(((...((..(((((((((..(((.((...........)).)))...))))))))).((((....))))))..))). ( -18.50) >DroAna_CAF1 19957 78 + 1 -------U-----CCAAU--UUUUUGC---UUUCCA--UUUACAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC -------.-----.....--((((.((---(.((..--......))...))).)))).(((((((.(........)..(((....)))))))))).. ( -15.20) >consensus _______UUACUGAAAAUGCUUUUUGGUUAUUUCGAUUUUUGCAGAUAUAGCCAAAACGUGUGCCAUGAAGGAGAAAAGCAAAAAUGCGGCACGCAC ......................(((((((((.((..........)).)))))))))..(((((((.(........)..(((....)))))))))).. (-16.72 = -17.80 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:13 2006