Locus 3311

Sequence ID 3R_DroMel_CAF1
Location 8,889,493 – 8,889,586
Length 93
Max. P 0.687970
window5340

overview

Window 0

Location 8,889,493 – 8,889,586
Length 93
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 71.10
Mean single sequence MFE -20.84
Consensus MFE -7.00
Energy contribution -7.80
Covariance contribution 0.80
Combinations/Pair 1.33
Mean z-score -1.79
Structure conservation index 0.34
SVM decision value 0.32
SVM RNA-class probability 0.687970
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8889493 93 + 27905053
UGAAUAAAAAUGGCGUCCAUGUAAA--GGAAGAAGCCCCUCUCUCACU------CUGUCUCUAUCUCACCCACACAAAGAGCAG------CAGGCACCAAUACAACC
..........(((.(((........--(..(((......)))..)...------(((.((((...............)))))))------..))).)))........ ( -13.86)
>DroSec_CAF1 11395 90 + 1
UGAAUAAAAAUGGCGUCCAUGC-----GGGGGAAGCCCCUCUCUCACU------CUGUCUCUUUCUCGCCCACACACAGAGCAG------UGGGCACCAAUACAACC
..........(((.((((((((-----((((....))))........(------((((.................)))))))).------))))).)))........ ( -26.83)
>DroSim_CAF1 11372 93 + 1
UGAAUAAAAAUGGCGUCCAUGUAAA--GGGGGAAGCCCCUCUCUCACU------CUGUCUCCUUCUCACCCACACAAAGAGCAG------CGGGCACCAAUACAACC
..........(((.((((......(--((((....)))))........------(((.(((.................))))))------.)))).)))........ ( -23.03)
>DroEre_CAF1 11574 92 + 1
CGAACAAAAAUGGCGUCCAUGUAAA--GGG-------CAUCUCUCUCUCUCCUUCUCUGUCUCUCUUACCCACACACAGAGAAG------CUAACGCCAAUAGAACC
..........((((((((.......--)))-------).............(((((((((...............)))))))))------.....))))........ ( -21.86)
>DroAna_CAF1 11289 90 + 1
A-AAAAAAUAUGGCGCCCGUAUAAAAUGGGGAAAGCCCCUUUCUCUCU------C--------UCU--CGCACGCAGCGUGUAGAAGUUCUAAGCACCAAUACAAAC
.-........(((.((...........((((....)))).........------.--------(((--.(((((...))))))))........)).)))........ ( -18.60)
>consensus
UGAAUAAAAAUGGCGUCCAUGUAAA__GGGGGAAGCCCCUCUCUCACU______CUGUCUCUUUCUCACCCACACAAAGAGCAG______CAGGCACCAAUACAACC
..........(((.(((..........((((((......))))))...................(((...........)))...........))).)))........ ( -7.00 =  -7.80 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:08 2006