Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,261,533 – 1,261,633 |
Length | 100 |
Max. P | 0.610031 |
Location | 1,261,533 – 1,261,633 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 85.63 |
Mean single sequence MFE | -21.67 |
Consensus MFE | -15.12 |
Energy contribution | -15.23 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -2.09 |
Structure conservation index | 0.70 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610031 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1261533 100 + 27905053 -----CUGACAGUUGAGUGCGACACAGUAC----AUAUAAAUUUAAGAAAAUUUAAAUCCAUAUAAAUAUACUCGAAAUUGCACAUAGGGUAUCAACCAUUCGACUCAC -----.....((((((((((((..(((((.----((((..(((((((....)))))))..)))).....)))).)...))))))....(((....)))..))))))... ( -16.20) >DroSec_CAF1 38354 109 + 1 AAUUACUGACAGUUGAGUGGGACACAGCACCAUCCUGCAAUAUUUAGACAAUUUAAAUCCAUAGAGAUAUACUCUGAAUUGCACAUAAGGUAUCAACCAUUCGACUCAC ..........((((((((((........(((....(((((((((((((...)))))))...(((((.....))))).)))))).....))).....))))))))))... ( -23.62) >DroSim_CAF1 33016 109 + 1 AAUUACUGACAGUUGAGUGGGACACAGCACCAACCUGCAAUAUUUAGACAAUUUAAAUCCAUAGAGAUAUACUCUGAAUUGCACAUAGGGUAUCAACCAUUCGACUCAC ..........((((((((((......((.((....(((((((((((((...)))))))...(((((.....))))).))))))....)))).....))))))))))... ( -25.20) >consensus AAUUACUGACAGUUGAGUGGGACACAGCACCA_CCUGCAAUAUUUAGACAAUUUAAAUCCAUAGAGAUAUACUCUGAAUUGCACAUAGGGUAUCAACCAUUCGACUCAC ..........((((((((((......(((......)))..............................((((((((.........))))))))...))))))))))... (-15.12 = -15.23 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:36 2006