Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,864,945 – 8,865,049 |
Length | 104 |
Max. P | 0.713363 |
Location | 8,864,945 – 8,865,049 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 75.59 |
Mean single sequence MFE | -23.92 |
Consensus MFE | -19.86 |
Energy contribution | -19.50 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.29 |
Mean z-score | -0.76 |
Structure conservation index | 0.83 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.713363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8864945 104 + 27905053 CUGCGCCAUGAUUGCGCCUCGGUUCGCCAUAACGGCAGCACACUGUGCCAGCGUCGGUGGGUAAGCAAAAAAAAAUAAAUAAAAAUGAAAAACAAAACCAAAGA----- ..((((.......))))...((((.(((.....))).((.(((((((....)).))))).)).................................)))).....----- ( -20.50) >DroSec_CAF1 397 89 + 1 CUGCGCCAUGAUUGCGCCUCGGUUCGCCAUAACGGCAGCCCACUGUGCCAGCGUCGGUGGGUAAGCAAAAAAAAGA-------A---GAAAACAA-----AACA----- .((((((...((.(((........))).))...))).((((((((((....)).))))))))..))).........-------.---........-----....----- ( -25.30) >DroSim_CAF1 389 92 + 1 CUGCGCCAUGAUUGCGCCUCGGUUCGCCAUAACGGCAGCCCACUGUGCCAGCGUCGGUGGGUAAGCAAAAAAAAAA-------AAAGAAAAACAA-----CACA----- .((((((...((.(((........))).))...))).((((((((((....)).))))))))..))).........-------............-----....----- ( -25.30) >DroEre_CAF1 474 96 + 1 CUGCGUUAUGAUUGCGCCUCGGUUCGCCAUAACGGCAGCCCACUGUGCCAGCGUCGGUGGGUAAGCAAAAAAUG-A-------AAAGAAAAAUAC-----GAUAGAGCG ..((((.......))))....(((((((.....))).((((((((((....)).))))))))............-.-------............-----....)))). ( -27.40) >DroYak_CAF1 404 96 + 1 CUGCGUCAUGAUUGCGCCUCGGUUCGCCAUAACGGCAGCCCACUGUGCCAGCGUCGGUGGGUAAGCAAAAAACG-A-------AAAGAAAAACAC-----GAUGGAGCG .............((.(((((.((((((.....))).((((((((((....)).))))))))............-.-------...))).....)-----)).)).)). ( -28.60) >DroAna_CAF1 474 100 + 1 UUGCGUAUUAAUUGCCCCAAAGUUUGCUUUAACGGCCGCCCACUGUGCCAACAUUGGCGGGUAAGUGACAAAGAGA---GAAAUAUAACGAACAU-ACUAAAAU----- ....((.....((((((.((((....)))).((((.......))))((((....))))))))))...)).......---................-........----- ( -16.40) >consensus CUGCGCCAUGAUUGCGCCUCGGUUCGCCAUAACGGCAGCCCACUGUGCCAGCGUCGGUGGGUAAGCAAAAAAAA_A_______AAAGAAAAACAA_____AACA_____ ...........((((..........(((.....))).((((((((((....)).))))))))..))))......................................... (-19.86 = -19.50 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:03 2006