Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,856,014 – 8,856,104 |
Length | 90 |
Max. P | 0.839009 |
Location | 8,856,014 – 8,856,104 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 74.89 |
Mean single sequence MFE | -24.33 |
Consensus MFE | -8.34 |
Energy contribution | -8.37 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.50 |
Mean z-score | -2.42 |
Structure conservation index | 0.34 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839009 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8856014 90 - 27905053 GGUGAAUUACACAAAUUCUAAGGCAAA----UAUGUGGAGCACAAAUGUGUGUGCGUGUGUGGCGCAGACUUUAAAGUCAGUCGAGAAAACCCG ((((((((.....)))))...(((...----..((((..(((((...((....)).)))))..))))((((....)))).)))......))).. ( -20.20) >DroSec_CAF1 30104 90 - 1 GGUGAAUUACACAAAAUCUGAGACAUA----UACGUGGAGCACAAAUGUGUGUACGUGUGUGGCGCAGACUUUAAAGUCAGUCGAAAAAAACAG .(((.....)))(((.((((...((((----((((((..((((....)))).))))))))))...)))).)))..................... ( -24.30) >DroSim_CAF1 29942 90 - 1 GGUGAAUUACACAAAUUCAGAGUCAUA----UAUGUGGAGCACAAAUGUGUGUACGUGUGUGGCGCAGACUUUAAAGUCAGUCGAGAAAAACCG ((((((((.....))))).((((((((----((((((..((((....)))).))))))))))))...((((....))))..)).......))). ( -28.00) >DroEre_CAF1 30743 90 - 1 GGUGAUUUACAGAAAUUCUGACACAAA----UAUAUGGAGCACAAAUGUGUGUACGUAAGUGGCGCAGACUGAAAAGUCAGUCGAGAAAAACCG (((..(((.(((.....))).(((...----..((((..((((....))))...)))).))).....((((((....))))))..)))..))). ( -21.00) >DroYak_CAF1 31244 90 - 1 GGUGAUUUACAGAAAUUCUGAGGCUAA----UAUAUGAAGCACAAAUGUGUGUACGUAAAUGGCACAGACUGAAAAGUCAGUCGAGAAAACCCG (((..(((.(((.....)))..((((.----..((((..((((....))))...))))..))))...((((((....)))))).)))..))).. ( -21.90) >DroMoj_CAF1 32633 84 - 1 CAAGCA-UACAUACAUGCUAACAGACAGGCCUUUGUGG-GUAUGUAUGUGUGUGUA----U-GUGCA---UGUACAGCUAGCUGACGAAAGCAA ...(((-((((((((((((.(((((......))))).)-))))))))))))))...----(-((...---(((.(((....))))))...))). ( -30.60) >consensus GGUGAAUUACACAAAUUCUGAGACAAA____UAUGUGGAGCACAAAUGUGUGUACGUGUGUGGCGCAGACUGUAAAGUCAGUCGAGAAAAACCG ...............................((((((..((((....)))).))))))..((((...((((....)))).)))).......... ( -8.34 = -8.37 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:02 2006