Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,854,858 – 8,854,976 |
Length | 118 |
Max. P | 0.773795 |
Location | 8,854,858 – 8,854,976 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.45 |
Mean single sequence MFE | -30.69 |
Consensus MFE | -20.79 |
Energy contribution | -20.97 |
Covariance contribution | 0.18 |
Combinations/Pair | 1.34 |
Mean z-score | -1.73 |
Structure conservation index | 0.68 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.773795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8854858 118 - 27905053 GCUUAAGCAGAGGCUUAUUCAAAAGUAUGAGGACCAGUUGGACAGGCAAAAAGAAAGCCAACAGCGAAACGCGUUAGCCAUGAAGCAAAAGUGUUUCGAUCUGCUGAAGCAGUUCCUU ((((.(((((((((((.((((......))))..((....)).............))))).....((((((((....((......))....)))))))).)))))).))))........ ( -35.50) >DroVir_CAF1 30719 118 - 1 CUUGCAAGCACAGCUUGUGCAAAAAUAUGAAGCAAAGCUGGCCAAACAGGAGAGAGCCCAUCAAGUAAAGGUUUCACAACUGAAACACAAAUGUUUCGAGUUGCUGCAGCAGUGCCUA .((((..((.((((((.(((...........)))))))))))....(((..((((.((...........)))))).(((((((((((....)))))).))))))))..))))...... ( -29.40) >DroSec_CAF1 28973 118 - 1 GCUGAAGCAGAGGCUUAUUCAAAAGUAUGAGGACCAGUUGGACAGGCAAAAAGAAAGCGAACAGCGAAAUGCUUUAGCCAUGAAGCACAAGUGUUUCGAUCUGUUUAAGCAGUUCCUU (((((((((...((((.(((((..((......))...))))).)))).........((.....))....)))))))))...((((((....))))))((.((((....)))).))... ( -32.70) >DroSim_CAF1 28802 118 - 1 GCUCAAGCAGAGGCUUAUUCAAAAGUAUGAGGACCAGUUGGACAGGCAAAAAGAAAGCGAACAGCGAAACGCUUUAGCCAUGAAACACAAGUGUUUCGAUCUGUUUAAGCAGUUCCUU (((.(((((((((((..(((((..((......))...)))))...........((((((..........)))))))))).(((((((....))))))).))))))).)))........ ( -30.90) >DroEre_CAF1 29620 118 - 1 GCUUAAGCAGAGGCUAAUUCAAAAGUAUGAGGACCAGUUGCUAAGACAAGAAGAAAGCCAACAGAGAAACGCUUUAGCCAUGAAGCAAAAGUGCUUCGAUCUGUUGAAGCAGUUCCUC ((((.((((((((((((((((......)))).....((((((.............)).))))...........)))))).(((((((....))))))).)))))).))))........ ( -31.42) >DroYak_CAF1 30103 118 - 1 GCUUAAGCAGAGGCUAAUUCAAAAGUAUGAGGACCAGUUGAUCAGACAAAAAGAAAGCCAACAGAGAAACGCUAUAGCCAUGAAGCAGAAGUGUUUCGAUCUUUUAAAGCAGUUCCUU ((((.((.(((((((..((((......)))).....(((.....)))........))))......((((((((...((......))...))))))))..))).)).))))........ ( -24.20) >consensus GCUUAAGCAGAGGCUUAUUCAAAAGUAUGAGGACCAGUUGGACAGACAAAAAGAAAGCCAACAGCGAAACGCUUUAGCCAUGAAGCACAAGUGUUUCGAUCUGUUGAAGCAGUUCCUU ((((.((((((((((......................(((......)))....(((((............))))))))).(((((((....))))))).)))))).))))........ (-20.79 = -20.97 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:58:01 2006