Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,833,567 – 8,833,680 |
Length | 113 |
Max. P | 0.551249 |
Location | 8,833,567 – 8,833,680 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.16 |
Mean single sequence MFE | -45.87 |
Consensus MFE | -24.20 |
Energy contribution | -24.29 |
Covariance contribution | 0.09 |
Combinations/Pair | 1.30 |
Mean z-score | -1.66 |
Structure conservation index | 0.53 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551249 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8833567 113 + 27905053 CCCAUUUGGCUAUGACUUCGAUCCCUCC----UCGGUGGUGCCGGGCGGAGGAUCGAAGGCGGCCAGCGUGGCCAGCGAUCUGAACGAAUUCCUGCGCCGCAGCCCGCUCAGCCAGC .....((((((....(((((((((..((----((((.....))))).)..)))))))))((((...((((((((((.((...........))))).))))).))))))..)))))). ( -53.10) >DroVir_CAF1 8974 98 + 1 UCCCUUUGGCUAUGACUUUGAGCC-------------------GGCGCCUGGCUCAAAGCCCGCCAGCGUCGGCAGCGAUCUGAAUGAAUUCUUGCGUCGCAGUCCGCACAGCCAGC .....((((((..((((....(((-------------------(((((.((((.........)))))))))))).(((((..(((....)))....))))))))).....)))))). ( -38.70) >DroGri_CAF1 8529 98 + 1 UCCCUUUGGCUAUGACUUUGAGUC-------------------GGCGGCUGGCUCAAAGCCGGCCAGCGUUGCCAGUGAUCUGAAUGAGUACUUGCGCCGCAGCCCGCACAGCCAGC .....((((((..(((.....)))-------------------((((((((((.....))))))).(((.(((.((((.((.....)).)))).))).))).))).....)))))). ( -42.80) >DroEre_CAF1 8044 110 + 1 CCCCUUUGGCUACGACUUCGACCA---C----UCGGUGGUACCGGGUGGAGGCUCGAAGGCGGCCAGCGUGGCCAGCGAUCUGAACGAGUUCCUGCGCCGCAGCCCGCUCAGCCAGC .....((((((....(((((((((---(----((((.....))))))))....))))))((((...((((((((((.((.((.....)).))))).))))).))))))..)))))). ( -50.20) >DroMoj_CAF1 8831 98 + 1 UCCGUUUGGCUAUGACUUUGAGCC-------------------GGCGGCAGGCUCCAAGCCCGCCAGCGUGGCAAGCGACCUGAAUGAGUUCUUGCGUCGCAGCCCGCACAGCCAGC .......((((.........))))-------------------((((((.(((.....))).))).(((.(((..((((((.(((....)))..).))))).))))))...)))... ( -40.30) >DroAna_CAF1 8086 116 + 1 UCCCUUUGGCUACGACUUCGAUCCCUCGAUUGGCGGCGGAGCCG-GAGGUGGCUCCAAGGCCGCCAGUGUGGCCAGCGAUCUGAACGAAUUCCUGCGCCGCAGUCCCCACAGCCAGC .....((((((..(((.((((....))))(((((((((((((((-....)))))))...))))))))(((((((((.((...........))))).))))))))).....)))))). ( -50.10) >consensus UCCCUUUGGCUAUGACUUCGAGCC___________________GGCGGCAGGCUCAAAGCCCGCCAGCGUGGCCAGCGAUCUGAACGAAUUCCUGCGCCGCAGCCCGCACAGCCAGC .....((((((....(((((((((..........................)))))))))...((..((((((((((.(((........))).))).))))).))..))..)))))). (-24.20 = -24.29 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:58 2006