Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,832,853 – 8,832,961 |
Length | 108 |
Max. P | 0.615600 |
Location | 8,832,853 – 8,832,961 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 80.01 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -20.23 |
Energy contribution | -19.32 |
Covariance contribution | -0.91 |
Combinations/Pair | 1.27 |
Mean z-score | -1.49 |
Structure conservation index | 0.64 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8832853 108 + 27905053 GCAUUCCGAACACCGGAGUCAUUCGCUACGACGACGCCGCCUUUCUCAAGAACUUGAUACCGGGCCAGCAUCUCAACAACGAGGUGCGUUACGGAUAUGAUAACUGUU .((((((((((...((.(((..(((...))).))).))((((...((((....))))....))))..(((((((......)))))))))).)))).)))......... ( -32.20) >DroVir_CAF1 7780 107 + 1 GCAUACCAAACACUGGCGUCAUACGCUAUGACGAUGCGGCGUUCCUCAAGAAUUUGAUACCGGGCCAGCAUCUCAACAACGAGGUGCGUUCCUGCGAGCCGCUCUGG- .....(((..((.(((((.....)))))))..((.(((((((((.....))))......(((((...(((((((......)))))))...)))).).))))))))))- ( -35.90) >DroPse_CAF1 7476 99 + 1 GCAUACCGAACACCGGGGUCAUACGCUACGACGACGCCGCCUUCCUCAAGAACUUGAUACCGGGACAGCAUCUCAACAACGAGGUGUGUGCCGGCCAU---------U .......(((...(((.(((............))).)))..))).((((....))))..((((.(((.((((((......))))))))).))))....---------. ( -28.60) >DroGri_CAF1 7629 95 + 1 GAAUACCCAACACUGGCGUCAUACGCUAUGAUGACGCCGCAUUCCUCAAAAACUUGAUACCGGGUCAGCAUCUCAACAACGAGGUGCGUUUAUUC------------- ((((((((......((((((((........)))))))).......((((....))))....)))...(((((((......)))))))...)))))------------- ( -31.40) >DroMoj_CAF1 7820 107 + 1 GCAUACCCAACACCGGCGUCAUUCGCUAUGACGAUGCGGCCUUCCUCAAGAAUUUGAUACCGGGCCAGCAUCUCAACAACGAGGUGCGUUCCUGUGAGCCACUCUGG- ((((..((......))((((((.....))))))))))(((((...((((....))))....))))).(((((((......)))))))((((....))))........- ( -33.40) >DroAna_CAF1 7286 97 + 1 GCAUACCCAACACCGGCGUUAUACGCUACGACGACGCCGCCUUCCUAAAGAACUUGAUACCGGGACAGCAUCUCAACAACGAGGUGCGUGGC---UAUCA-------- ((...(((.....((((((..(.((...)))..)))))).(((....)))...........))).(((((((((......))))))).))))---.....-------- ( -27.50) >consensus GCAUACCCAACACCGGCGUCAUACGCUACGACGACGCCGCCUUCCUCAAGAACUUGAUACCGGGCCAGCAUCUCAACAACGAGGUGCGUUCCUGCGAUC_________ ............((((.((((...((..((....))..)).(((.....)))..)))).))))....(((((((......)))))))..................... (-20.23 = -19.32 + -0.91)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:57 2006