Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,259,897 – 1,259,988 |
Length | 91 |
Max. P | 0.614493 |
Location | 1,259,897 – 1,259,988 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 96.32 |
Mean single sequence MFE | -25.17 |
Consensus MFE | -24.40 |
Energy contribution | -24.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.97 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.614493 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1259897 91 + 27905053 AUUAUGAAAGGGGUGGCAAUCCAUUAGUGUCCCUUUUCGGAUGGCAGACUGUAGCACCAAUUAGAGGUACAGCUGUCUUGUAAAAAAGAUG ....(((((((((..((.........))..)))))))))...(((((.(((((.(.(......).).)))))))))).............. ( -24.50) >DroSec_CAF1 36747 90 + 1 AUUAAGAAAGGGGUGGCAAUCCAUUAGUGUCCCUUUUCGGAUGGCAGACUGUAGCCCCAAUUAGAGGUACAGCUGUCUUAUAAA-CAGAUG .....((((((((..((.........))..))))))))....(((((.(((((.((.(.....).)))))))))))).......-...... ( -25.50) >DroSim_CAF1 31408 90 + 1 AUUAAGAAAGGGGUGGCAAUCCAUUAGUGUCCCUUUUCGGAUGGCAGACUGUAGCCCCAAUUAGAGGUACAGCUGUCUUAUAAA-CAGAUG .....((((((((..((.........))..))))))))....(((((.(((((.((.(.....).)))))))))))).......-...... ( -25.50) >consensus AUUAAGAAAGGGGUGGCAAUCCAUUAGUGUCCCUUUUCGGAUGGCAGACUGUAGCCCCAAUUAGAGGUACAGCUGUCUUAUAAA_CAGAUG .....((((((((..((.........))..))))))))....(((((.(((((.(.(......).).)))))))))).............. (-24.40 = -24.40 + 0.00)
Location | 1,259,897 – 1,259,988 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 96.32 |
Mean single sequence MFE | -20.81 |
Consensus MFE | -19.94 |
Energy contribution | -20.28 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.96 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.610079 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1259897 91 - 27905053 CAUCUUUUUUACAAGACAGCUGUACCUCUAAUUGGUGCUACAGUCUGCCAUCCGAAAAGGGACACUAAUGGAUUGCCACCCCUUUCAUAAU .............((((.(..(((((.......)))))..).)))).......((((.(((.......(((....)))))).))))..... ( -18.61) >DroSec_CAF1 36747 90 - 1 CAUCUG-UUUAUAAGACAGCUGUACCUCUAAUUGGGGCUACAGUCUGCCAUCCGAAAAGGGACACUAAUGGAUUGCCACCCCUUUCUUAAU ......-.......(.((((((((((((.....)))).))))).))).)....((((.(((.......(((....)))))).))))..... ( -21.91) >DroSim_CAF1 31408 90 - 1 CAUCUG-UUUAUAAGACAGCUGUACCUCUAAUUGGGGCUACAGUCUGCCAUCCGAAAAGGGACACUAAUGGAUUGCCACCCCUUUCUUAAU ......-.......(.((((((((((((.....)))).))))).))).)....((((.(((.......(((....)))))).))))..... ( -21.91) >consensus CAUCUG_UUUAUAAGACAGCUGUACCUCUAAUUGGGGCUACAGUCUGCCAUCCGAAAAGGGACACUAAUGGAUUGCCACCCCUUUCUUAAU ..............(.((((((((((((.....)))).))))).))).)....((((.(((.......(((....)))))).))))..... (-19.94 = -20.28 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:35 2006