| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 276,197 – 276,291 |
| Length | 94 |
| Max. P | 0.749093 |
| Location | 276,197 – 276,291 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 78.98 |
| Mean single sequence MFE | -30.10 |
| Consensus MFE | -16.06 |
| Energy contribution | -17.88 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.749093 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 276197 94 + 27905053 UUUUUUUGCUGAACGGCUUUGGG---CCGUUCUACCAAAAAGCCAGGGCGUAAACUAUAGGUGGUUACCGGGCGAUAGUCCGGUAGUUCGGUUUCUA ..((((((..(((((((.....)---))))))...))))))(((.((((...(((((....)))))(((((((....))))))).)))))))..... ( -35.40) >DroSec_CAF1 11532 91 + 1 UU-UUAUGUUGCACUG--AUGGG---CAGGCCUACCAAAAAGUCGGCGAGUAAACUAUAGGUGAUUACCGGGCGAUAGUCCGGUAGUUCGGUUUCUA ..-........((((.--(((((---(..(((.((......)).)))..))...)))).))))((((((((((....)))))))))).......... ( -26.50) >DroSim_CAF1 12650 92 + 1 UU-UUAUGCUGCACUGG-AAGGG---CAGGCCUACCAAAAAGUCAGCGAGUAAACUAUAGGUGAUUACCGGGCGAUAGUCCGGUAGUUCGGUUUCUA ..-...(((((.(((((-.(((.---....))).))....))))))))((.(((((......(((((((((((....))))))))))).))))))). ( -29.50) >DroEre_CAF1 14146 82 + 1 -U-U---GCUGCACUG--AUGGCUUU-------GCCAAAAAGUCUUGGC-GAAACUACAAGUGAUUACCGGGCGAUAAUCCGGUAGUUCGGUUUCUA -.-.---((((((((.--.(((.(((-------(((((......)))))-))).)))..))))(((((((((......))))))))).))))..... ( -29.00) >consensus UU_UUAUGCUGCACUG__AUGGG___CAGGCCUACCAAAAAGUCAGCGAGUAAACUAUAGGUGAUUACCGGGCGAUAGUCCGGUAGUUCGGUUUCUA ......(((((.(((....(((............)))...))))))))...(((((......(((((((((((....))))))))))).)))))... (-16.06 = -17.88 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:53 2006